Applications:

For end-users, the SBL provides binary programs that can be run from the command-line. To ease the process of using them, the SBL also provides plugins for the most popular molecular visualization tools: Visual Molecular Dynamics (VMD) and PyMOL. See Applications: Work Packages and Installation from Pre-compiled Static Programs for more details.

Platform specific auto-install scripts

For MacOS and Linux 64 bits

Direct Access

Space Filling Models

Finding interfaces	Designing coarse grain models	Shelling diagrams: encoding
Dissecting interfaces	Molecular surfaces, volumes and packing	Shelling diagrams: comparison

Conformational Analysis

Landscape explorer	Conformational ensemble analysis	Conformational ensembles comparison
Transition graphs	Energy landscape analysis	Energy landscapes comparison
Molecular distances flexible	Structural motifs

Large Assemblies

Connectivity inference

Integrated Analysis

Binding affinity prediction	FunChaT

Data Management

XML data parsing and analysis	Managing multiple runs

Data Analysis

Density difference based clustering

Toolbox

Structural alignments	Clustering	3D Rigid registration
Morse theory for landscapes	Optimal transportation for graphs	Molecular distances
D Family matching	Protein representation	Iterative alignment