Characterizes the fragmentation of AlphaFold predictions
Interface finder
Analyzes interfaces and interactions within macromolecular complexes
Interface modeler
Detects pairs of interface particles, either between partners in a complex or via mediators (e.g., interfacial water molecules)
Interface comparator
Combines MSA with interface models to yield Multiple Interface String Alignments (MISA) that encode properties of amino acids at protein–protein interfaces
Kpax aligner
Provides a generic implementation of the Kpax algorithm, a reference structural aligner
Spectral domain finder
Identifies structural domains by maximizing intra-domain and minimizing inter-domain interactions
Vorlume
Computes molecular surfaces, volumes, and packing properties
Tripeptide loop closure
Generates tripeptide segments using Tripeptide Loop Closure (TLC)