CSB

Packages
	Alignment_engines
	Engines performing alignments of sequences or structures Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and S. Marillet and R. Tetley
	Alpha_complex_of_molecular_model
	3D weighted -complex from the CGAL library where vertices have an attached particle Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus
	Apurva
	Structural alignment ... Reference Manual – User Manual . Authors: N. Malod-Dognin and R. Andonov
	Buried_surface_area
	Algorithm for computing the surface area of a molecule buried in another molecule Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus
	DB_manipulator
	A package providing methods to ease the access to various protein related databases Reference Manual – User Manual . Authors: R. Tetley and F. Cazals
	HMMER_Wrapper
	A python wrapper for HMMER Reference Manual – User Manual . Authors: R. Tetley and F. Cazals
	Iterative_alignment
	A generic algorithm performing rounds of dynamic programming alignment and rigid superposition until a final structural alignment is reached. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and R. Tetley
	Molecular_conformation
	A package providing classes to store biomolecule conformations. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and C. Le Breton
	Molecular_coordinates
	Conversion between coordinate systems for a molecule Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and T. O'Donnell
	Molecular_covalent_structure
	Representation of the topology of a molecule Reference Manual – User Manual . Authors: F. Cazals and A. Chevallier and T. Dreyfus
	Molecular_distances
	Algorithms computing different kind of distances between molecular conformations. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus
	Molecular_geometric_model_classifier
	Data structure classifying the contacts between atoms of a molecular geometric model. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus
	Molecular_interfaces
	Data structures and algorithms for computing the interface patches between different partners in a molecule Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus
	Molecular_potential_energy
	Computation of the potential energy of a molecule Reference Manual – User Manual . Authors: F. Cazals and A. Chevallier and T. Dreyfus
	Molecular_structure_classifier
	Data structure classifying contacts between atoms of different partners in a molecule Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus
	Molecular_system
	A package providing classes to store and architecture molecular data in a structured manner. Reference Manual – User Manual . Authors: F. Cazals and S. Loriot and C. Le Breton
	Pointwise_interactions
	A package to report pointwise interactions from atomic data Reference Manual – User Manual . Authors: F. Cazals and R. Tetley
	Protein_representation
	A package providing classes to easily access all pieces of information attached to proteins. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and R. Tetley
	Protein_sequence_annotator
	A package providing methods to annotate protein sequences Reference Manual – User Manual . Authors: R. Tetley and F. Cazals
	Real_value_function_minimizer
	Under Construction Reference Manual – User Manual . Authors: A. Roth and F. Cazals and T. Dreyfus
	Tertiary_quaternary_structure_annotator
	A package to annotate contacts within tertiary and quaternary structures Reference Manual – User Manual . Authors: F. Cazals and and T. Dreyfus and R. Tetley
	Transition_graph_traits
	Under Construction Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus
	Tripeptide_loop_closure
	Here you should put an abstract of your package Reference Manual – User Manual . Authors: F. Cazals and T.O'Donnell

Description

Computational Structural Biology.

This set of packages present specific algorithms used in Computational Structural Biology, such as the classification of molecular structures, the definition of molecular interfaces, and the computation of buried surface areas.