Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
CSB

Packages

 Alignment_engines
 Engines performing alignments of sequences or structures Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus and S. Marillet and R. Tetley
 
 Alpha_complex_of_molecular_model
 3D weighted $\alpha$-complex from the CGAL library where vertices have an attached particle Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 
 Apurva
 Structural alignment ... Reference ManualUser Manual . Authors: N. Malod-Dognin and R. Andonov
 
 Buried_surface_area
 Algorithm for computing the surface area of a molecule buried in another molecule Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 
 DB_manipulator
 A package providing methods to ease the access to various protein related databases Reference ManualUser Manual . Authors: R. Tetley and F. Cazals
 
 HMMER_Wrapper
 A python wrapper for HMMER Reference ManualUser Manual . Authors: R. Tetley and F. Cazals
 
 Iterative_alignment
 A generic algorithm performing rounds of dynamic programming alignment and rigid superposition until a final structural alignment is reached.
Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus and R. Tetley
 
 Molecular_coordinates
 Conversion between coordinate systems for a molecule Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 
 Molecular_covalent_structure
 Representation of the topology of a molecule Reference ManualUser Manual . Authors: F. Cazals and A. Chevallier and T. Dreyfus
 
 Molecular_distances
 Algorithms computing different kind of distances between molecular conformations. Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 
 Molecular_geometric_model_classifier
 Data structure classifying the contacts between atoms of a molecular geometric model. Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 
 Molecular_interfaces
 Data structures and algorithms for computing the interface patches between different partners in a molecule Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 
 Molecular_potential_energy
 Computation of the potential energy of a molecule Reference ManualUser Manual . Authors: F. Cazals and A. Chevallier and T. Dreyfus
 
 Molecular_structure_classifier
 Data structure classifying contacts between atoms of different partners in a molecule Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 
 Pointwise_interactions
 A package to report pointwise interactions from atomic data Reference ManualUser Manual . Authors: F. Cazals and R. Tetley
 
 Protein_representation
 A package providing classes to easily access all pieces of information attached to proteins. Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus and R. Tetley
 
 Protein_sequence_annotator
 A package providing methods to annotate protein sequences Reference ManualUser Manual . Authors: R. Tetley and F. Cazals
 
 Real_value_function_minimizer
 Under Construction Reference ManualUser Manual . Authors: A. Roth and F. Cazals and T. Dreyfus
 
 Tertiary_quaternary_structure_annotator
 A package to annotate contacts within tertiary and quaternary structures Reference ManualUser Manual . Authors: F. Cazals and and T. Dreyfus and R. Tetley
 
 Transition_graph_traits
 Under Construction Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 

Description

Computational Structural Biology.

This set of packages present specific algorithms used in Computational Structural Biology, such as the classification of molecular structures, the definition of molecular interfaces, and the computation of buried surface areas.