Engines performing alignments of sequences or structures Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and S. Marillet and R. Tetley
Main classes:
- T_Alignment_engine : Base engine for making alignments between structures and sequences.
- T_Aligner_sequence_seqan_wrapper : Wrapper of the Seqan algorithm for aligning pairwise sequences
- T_Alignment_engine_sequences_seqan : Engine for making alignments between sequences using Seqan.
- T_Alignment_engine_structures : Base engine for making alignments between structures.
- T_Aligner_structure_apurva_wrapper : Wrapper of the Apurva algorithm for aligning pairwise structures
- T_Alignment_engine_structures_apurva : Base engine for making alignments between structures using Apurva.
- T_Alignment_engine_structures_identity : Base engine for making alignments between two identical structures (in different conformations).
- T_Alignment_engine_structures_iterative_identity : Base engine for making queries in a identity alignment setting for a best local fit
- T_Alignment_engine_structures_kpax : Base engine for making alignments between structures using Kpax.
- T_Chains_residues_contiguous_indexer : Data structure to handle the contiguous indices of residues/un its in a chain even in the presence of missing residues/units.
1.9.1