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class | T_AD_buffer< Dummy > |
| Todo. More...
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class | T_AD_stack< Dummy > |
| Todo. More...
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class | T_Phi_psi_dihedral_angles_visitor< CovalentStructure > |
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Defines iterator over all successive pairs of dihedrals. More...
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class | T_Unbonded_particles_visitor< CovalentStructure > |
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Defines iterator over all distinct pairs of particles. More...
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class | T_Unbonded_particles_with_threshold_visitor< CovalentStructure, ConformationType > |
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Defines iterator over all distinct pairs of particles. More...
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class | T_Bonded_particles_visitor< CovalentStructure > |
| Defines iterator over the bonds of a covalent structure. More...
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class | T_Bond_angles_visitor< CovalentStructure > |
| Defines iterator over the bond angles of a covalent structure. More...
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class | T_Dihedral_angles_visitor< CovalentStructure > |
| Defines iterator over the dihedral angles of a covalent structure. More...
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class | T_Improper_angles_visitor< CovalentStructure > |
| Defines iterator over the improper angles of a covalent structure. More...
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class | T_Molecular_potential_energy_bond_length_term_harmonic< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the standard term associated to the bond length contribution. More...
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class | T_Molecular_potential_energy_bond_angle_term_harmonic< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the standard term associated to the bond angle contribution. More...
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class | T_Molecular_potential_energy_bond_angle_term_Urey_Bradley< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the Urey-Bradley term associated to a bond angle. More...
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class | T_Molecular_potential_energy_torsion_angle_term_harmonic< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the harmonic term associated to the proper dihedral angle contribution. More...
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class | T_Molecular_potential_energy_torsion_angle_term_periodic< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the periodic term associated to the proper dihedral angle contribution. More...
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class | T_Molecular_potential_energy_torsion_angle_term_Fourier< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the Fourier term associated to the proper dihedral angle contribution. More...
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class | T_Molecular_potential_energy_torsion_angle_term_Ryckaert_Bellemans< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the Ryckaert_Bellemans term associated to the proper dihedral angle contribution.
More...
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class | T_Molecular_potential_energy_cmap_term< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the CMap term associated to a pair of proper dihedral angles.
More...
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class | T_Molecular_potential_energy_Lennard_Jones_term< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the standard term associated to the Lennard Jones contribution. More...
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class | T_Molecular_potential_energy_electrostatic_term< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines a standard term associated to the electrostatic contribution. More...
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class | T_Molecular_potential_energy_contribution< Visitor, Term, Terms > |
| Contribution of an energy term to the potential energy function. More...
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class | T_Molecular_potential_energy_bonded_contribution< ConformationType, CovalentStructure, PotentialEnergyParameters, EnergyBondedLengthsTerm, EnergyBondAnglesTerm, EnergyDihedralAnglesTerm > |
| Contribution of all bonded energy terms to the potential energy function. More...
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class | T_Molecular_potential_energy< Contribution, Contributions > |
| Potential energy function adding up all the input contributions (C++11 only). More...
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class | T_Molecular_covalent_structure_bond_length_gradient< ConformationType, CovalentStructure > |
| Defines the gradient associated to the bond length. More...
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class | T_Molecular_covalent_structure_bond_angle_gradient< ConformationType, CovalentStructure > |
| Defines the gradient associated to the bond angle. More...
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class | T_Molecular_covalent_structure_torsion_angle_gradient< ConformationType, CovalentStructure > |
| Defines the gradient associated to the torsion angle. More...
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class | T_Molecular_potential_energy_bond_length_gradient_harmonic< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the standard gradient associated to the bond length contribution. More...
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class | T_Molecular_potential_energy_bond_angle_gradient_harmonic< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the standard gradient associated to the bond angle contribution. More...
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class | T_Molecular_potential_energy_bond_angle_gradient_Urey_Bradley< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the Urey-Bradley gradient associated to a bond angle. More...
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class | T_Molecular_potential_energy_torsion_angle_gradient_harmonic< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the harmonic gradient associated to the proper dihedral angle contribution. More...
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class | T_Molecular_potential_energy_torsion_angle_gradient_periodic< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the periodic gradient associated to the proper dihedral angle contribution. More...
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class | T_Molecular_potential_energy_torsion_angle_gradient_Fourier< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the Fourier gradient associated to the proper dihedral angle contribution. More...
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class | T_Molecular_potential_energy_torsion_angle_gradient_Ryckaert_Bellemans< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the Ryckaert_Bellemans gradient associated to the proper dihedral angle contribution.
More...
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class | T_Molecular_potential_energy_torsion_angle_gradient_in_linear_structure< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the gradient associated to the torsion angle contribution in a linear structure. More...
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class | T_Molecular_potential_energy_Lennard_Jones_gradient< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the standard gradient associated to the Lennard Jones contribution. More...
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class | T_Molecular_potential_energy_electrostatic_gradient< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines a standard gradient associated to the electrostatic contribution. More...
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class | T_Molecular_potential_energy_gradient_contribution< Visitor, Term, Terms > |
| Contribution of an energy gradient term to the potential energy gradient function. More...
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class | T_Molecular_potential_energy_gradient< Contribution, Contributions > |
| Sum of the contributions of an energy gradient term to the potential energy gradient function. More...
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class | T_Molecular_potential_energy_numerical_gradient< MolecularPotentialEnergy, PotentialEnergyParameters > |
| Computes numerically the gradient of a potential energy function. More...
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class | T_Molecular_potential_energy_torsion_angle_in_linear_structure_term< ConformationType, CovalentStructure, PotentialEnergyParameters > |
| Defines the term associated to the torsion angle contribution in a linear structure. More...
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