Iterative_alignment

A generic algorithm performing rounds of dynamic programming alignment and rigid superposition until a final structural alignment is reached. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and R. Tetley

Main classes:

• T_Canonize_conformation :

Given a structure , a conformation and a C-alpha, translate and rotate the structure so that this C-alpha is at the origin, its neighbor C is on the z-axis (negative), and its neighbor N is on the zx plane (x positive)

• T_Iterative_aligner :

Given two structures

• T_Iterative_aligner_identity :

Given two structures

• T_Score_computer_K :

Given two canonized residues

• T_Seeder_basic : Given two structures, align them using Kpax_seeder

• T_Seeder_DP_score : Given two structures, align them using Seeder_DP_score