Conformational Analysis

Packages
	Conformational_ensemble_analysis
	This package provides methods to assess the conformational diversity of an ensemble of conformations. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and C. Roth
	Conformational_ensemble_comparison
	This package provides methods to compare, from a geometric/structural standpoint, two ensembles of conformations. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and C. Roth
	Correlated_motions_by_domain
	Correlation analsysis between rigid motions undergone by protein domains Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus
	Energy_landscape_analysis
	This package provides various methods to analyze sampled energy landscapes, with in particular various statistics on its transition and connectivity graphs. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and C. Roth
	Energy_landscape_comparison
	This package package provides method to perform various comparisons of two samples energy landscapes, taking into account the location of local minima, their occupancy probabilities, and possible their connections as encoded in a transition graph. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and D. Mazauric
	Kpax
	Here you should put an abstract of your package Reference Manual – User Manual . Authors: F. Cazals and R. Tetley
	Landscape_explorer
	This package provides sampling algorithms for energy landscapes, in the Monte Carlo realm, namely, basin hopping, rapidly expanding random trees, and hybrid algorithms mixing the previous two algorithms. Reference Manual – User Manual . Authors: F.Cazals and T. Dreyfus and C. Robert and A. Roth
	Molecular_distances_flexible
	This package provides methods to compute combined RMSD on user defined protein sub-domains introducing a notion of flexibility. Reference Manual – User Manual . Authors: F. Cazals and R. Tetley
	Spectral_domain_explorer
	Here you should put an abstract of your package Reference Manual – User Manual . Authors: F. Cazals and J. Herrmann and E. Sarti
	Structural_motifs
	A package providing methods to locate structural motifs shard by two structures Reference Manual – User Manual . Authors: F. Cazals and R. Tetley
	Transition_graph_of_energy_landscape_builders
	This package provides methods to build transition graphs, i.e. graphs connecting local minima of an energy landscape, across index one saddles. Reference Manual – User Manual . Authors: F. Cazals and T. Dreyfus and C. Roth

Description

Applications dealing with molecular flexibility.

None.