Multiple_interface_string_alignment

MISA provide a coloring of interface strings ie amino acids found at interfaces with various biological and biophysical quantities. Reference Manual – User Manual . Authors: S. Bereux and F. Cazals

Main classes:

• SBL::Multiple_interface_string_alignment::Colored_MISA : Store a MISA and its associated ColorEngine.

• SBL::Multiple_interface_string_alignment::cMISA_constructor : Construct all the colored MISA (cMISA).

• SBL::Multiple_interface_string_alignment::cMISA_recorder : Record all the colored MISA.

• SBL:: Multiple_interface_string_alignment::ResSelector : Filter only the residues at the interface.

• SBL:: Multiple_interface_string_alignment::Plot_tools : Plotting tools for the iRMSD.

• SBL:: Multiple_interface_string_alignment::Extract_shared_PDB_interface : Creates a PDB file with the interface atoms shared by each chain of the pair.

• SBL:: Multiple_interface_string_alignment::Compute_interface_lRMSD : Compute the interface lRMSD for each pair of chain of a MISA.

• SBL:: Multiple_interface_string_alignment::Create_And_Compute_iRMSD : Main class to compute the iRMSD for one MISA.

• SBL::Multiple_interface_string_alignment::ColorbarTools : Helper class for the display of the colorbar.

• SBL::Multiple_interface_string_alignment::Default_color_engine : Common skeleton of every color engine.

• SBL::Multiple_interface_string_alignment::SSE_coloring_parser : Gather the SSE value for every MISA.

• SBL::Multiple_interface_string_alignment::SSE_color_engine : Apply the SSE coloring to each residue

• SBL::Multiple_interface_string_alignment::BSA_coloring_parser : Gather the BSA value for every MISA.

• SBL::Multiple_interface_string_alignment::BSA_color_engine : Apply the BSA coloring to each residue.

• SBL::Multiple_interface_string_alignment::Delta_ASA_coloring_parser : Gather the Accessible Surface Area for each MISA.

• SBL::Multiple_interface_string_alignment::Delta_ASA_color_engine : Apply the Delta ASA coloring to each residue.

• SBL::Multiple_interface_string_alignment::B_factor_coloring_parser : Gather the B factor value for every MISA.

• SBL::Multiple_interface_string_alignment::B_factor_color_engine : Apply the B factor coloring to each residue.

• SBL::Multiple_interface_string_alignment::MISA_input_specification_parser : Read the specification file and input data.

• SBL::Multiple_interface_string_alignment::Residue_mapping : Realign homologous chains with a different numbering.

• SBL::Multiple_interface_string_alignment::Chain_instances : Contain the chain sequence from every chain of the MISA id.

• SBL::Multiple_interface_string_alignment::Interface_oneside : Contain the portion of each chain of the MISA which is at the interface.

• SBL::Multiple_interface_string_alignment::Interface_strings : Contain the character string of each chain of one MISA.

• SBL::Multiple_interface_string_alignment::Interface_pool : Contain the consensus interface.

• SBL::Multiple_interface_string_alignment::MISA : Main class which compute and store the MISA.

• SBL::Multiple_interface_string_alignment::MISA_constructor : Construct and process all the MISAs.