Chain_instances Class Reference

Constructions
	__init__ (self, verbose)
	Default constructor.
	fill_sequences (self, header, need_MSA, residue_mapping)
	Gather the present residues for each chain.

Basic Statistics
	apply_mapping (self, residue_mapping)
	Convert the indexing from the chain instances from the original numbering to the new numbering.

Detailed Description

Contain the chain sequence from every chain of the MISA id. Stored in a dictionnary (indexed by chain name) of dictionnaries (indexed by residue id).

Constructor & Destructor Documentation

__init__()

__init__	(		self,
			verbose )

Default constructor.

Member Function Documentation

apply_mapping()

apply_mapping	(		self,
			residue_mapping )

Convert the indexing from the chain instances from the original numbering to the new numbering.

fill_sequences()

fill_sequences	(		self,
			header,
			need_MSA,
			residue_mapping )

Gather the present residues for each chain.