Chain_instances Class Reference

Constructions
def	__init__ (self, verbose)
	Default constructor. More...
def	fill_sequences (self, header, need_MSA, residue_mapping)
	Gather the present residues for each chain. More...

Basic Statistics
def	apply_mapping (self, residue_mapping)
	Convert the indexing from the chain instances from the original numbering to the new numbering. More...

Detailed Description

Contain the chain sequence from every chain of the MISA id. Stored in a dictionnary (indexed by chain name) of dictionnaries (indexed by residue id).

Constructor & Destructor Documentation

__init__()

def __init__	(		self,
			verbose
	)

Default constructor.

Member Function Documentation

apply_mapping()

def apply_mapping	(		self,
			residue_mapping
	)

Convert the indexing from the chain instances from the original numbering to the new numbering.

fill_sequences()

def fill_sequences	(		self,
			header,
			need_MSA,
			residue_mapping
	)

Gather the present residues for each chain.