[includes] More...

Namespaces
	Batch_manager

	Binding_affinity_utils

	CADS

	Colored_MISA

	Combinations_of_variables_model_evaluation

	Connectivity_inference_analysis

	Connectivity_inference_data_structures

	Connectivity_inference_engine

	CSB

	DB_hit_manager

	DB_manipulators

	Density_difference_based_clustering_commons

	EL_comparators

	EMD_comparators

	FunChat_hit_filters

	GT

	HMMER_Wrapper

	IO

	iRMSD

	lrmsd

	mci_serialize_pickle_xml

	mci_table

	mcibootstrap_iterative

	MinimumConnectivityInference

	MISA_ColorEngines

	Models

	Modules

	Molecular_cradle_step1

	Molecular_cradle_step2

	Molecular_cradle_step2_1

	Molecular_cradle_step2_selected

	Molecular_cradle_step3

	Molecular_cradle_utils_dendogram

	Molecular_cradle_utils_distance

	Molecular_cradle_utils_label_selection

	Molecular_distances_flexible-python

	Multiple_interface_string_alignment

	PALSE

	PDB_complex_to_unbound_partners_matchings

	Protein_complex_analysis_molecular_data_structures

	Rigid_blocks_sequence_analyzer

	Samples_2_generator

	SBL_Genetrank_application

	SBL_Genetrank_gene_radar_scatter_plot

	SBL_Genetrank_gene_to_protein

	SBL_Genetrank_network_statistical_analysis

	SBL_Genetrank_ppi_loader

	SBL_Genetrank_simulation

	SBL_Genetrank_simulation_statistics

	SBL_pytools

	Sequence_annotators

	Sequence_filters

	Space_filling_model_interface

	Spheres_d_generator

	Structural_motifs

	TG_builders

	TG_weights_from_normalized_boltzmann

	WL_ATM_plot

Typedefs
typedef double	FT

typedef SBL::Models::T_Unit_system_traits_none_AKMA< FT >	UST_base

typedef SBL::Models::T_Unit_system_traits_for_potential_energy< UST_base >	Unit_system_traits

typedef std::vector< FT >	Conformation

typedef SBL::Models::T_Conformation_traits< Conformation >	Conformation_traits

typedef SBL::Models::T_Conformations_file_loader< Conformation >	Conformations_loader

typedef SBL::Models::T_Atom_with_hierarchical_info_traits	Particle_traits

typedef SBL::CSB::T_Particle_info_for_proteins< Particle_traits >	Particle_info

typedef SBL::CSB::T_Molecular_covalent_structure< Particle_info >	Covalent_structure_base

typedef SBL::CSB::T_Molecular_covalent_structure_builder_for_proteins< Covalent_structure_base >	Covalent_structure_builder

typedef SBL::IO::T_Molecular_covalent_structure_loader_from_PDB< Particle_traits, Covalent_structure_base, Covalent_structure_builder >	Covalent_structure_loader

typedef SBL::IO::T_Potential_energy_parameters< Covalent_structure_base, Unit_system_traits, FT >	Potential_energy_parameters_loader

typedef SBL::CSB::T_Molecular_potential_energy_structure_parameters_traits_optimal< Covalent_structure_base, Potential_energy_parameters_loader >	Structure_parameters_traits

typedef Structure_parameters_traits::Covalent_structure	Covalent_structure

typedef Structure_parameters_traits::Potential_energy_parameters	Potential_energy_parameters

typedef Structure_parameters_traits::Build_structure_parameters	Build_structure_parameters

typedef SBL::CSB::T_Bonded_particles_visitor< Covalent_structure >	Bonds_visitor

typedef SBL::CSB::T_Bond_angles_visitor< Covalent_structure >	Bond_angles_visitor

typedef SBL::CSB::T_Dihedral_angles_visitor< Covalent_structure >	Proper_angles_visitor

typedef SBL::CSB::T_Unbonded_particles_with_threshold_visitor< Covalent_structure, Conformation >	Non_bonded_visitor

typedef SBL::CSB::T_Molecular_potential_energy_bonded_contribution< Conformation, Covalent_structure, Potential_energy_parameters >	Bonded_contributions

typedef SBL::CSB::T_Molecular_potential_energy_Lennard_Jones_term< Conformation, Covalent_structure, Potential_energy_parameters >	Lennard_Jones_term

typedef SBL::CSB::T_Molecular_potential_energy_electrostatic_term< Conformation, Covalent_structure, Potential_energy_parameters >	Electrostatic_term

typedef SBL::CSB::T_Molecular_potential_energy_bond_length_gradient_harmonic< Conformation, Covalent_structure, Potential_energy_parameters >	Bond_length_gradient_term

typedef SBL::CSB::T_Molecular_potential_energy_bond_angle_gradient_harmonic< Conformation, Covalent_structure, Potential_energy_parameters >	Bond_angle_gradient_term

typedef SBL::CSB::T_Molecular_potential_energy_torsion_angle_gradient_periodic< Conformation, Covalent_structure, Potential_energy_parameters >	Torsion_angle_gradient_term

typedef SBL::CSB::T_Molecular_potential_energy_Lennard_Jones_gradient< Conformation, Covalent_structure, Potential_energy_parameters >	Lennard_Jones_gradient_term

typedef SBL::CSB::T_Molecular_potential_energy_electrostatic_gradient< Conformation, Covalent_structure, Potential_energy_parameters >	Electrostatic_gradient_term

typedef SBL::CSB::T_Molecular_potential_energy_contribution< Non_bonded_visitor, Lennard_Jones_term, Electrostatic_term >	Non_bonded_contributions

typedef SBL::CSB::T_Molecular_potential_energy_gradient_contribution< Bonds_visitor, Bond_length_gradient_term >	Bond_length_gradient_contribution

typedef SBL::CSB::T_Molecular_potential_energy_gradient_contribution< Bond_angles_visitor, Bond_angle_gradient_term >	Bond_angle_gradient_contribution

typedef SBL::CSB::T_Molecular_potential_energy_gradient_contribution< Proper_angles_visitor, Torsion_angle_gradient_term >	Torsion_angle_gradient_contribution

typedef SBL::CSB::T_Molecular_potential_energy_gradient_contribution< Non_bonded_visitor, Lennard_Jones_gradient_term >	Lennard_Jones_gradient_contribution

typedef SBL::CSB::T_Molecular_potential_energy_gradient_contribution< Non_bonded_visitor, Electrostatic_gradient_term >	Electrostatic_gradient_contribution

typedef Electrostatic_gradient_contribution::Molar_energy_gradient_quantity	Molar_energy_gradient_quantity

typedef SBL::CSB::T_Molecular_potential_energy< Bonded_contributions, Non_bonded_contributions >	Molecular_potential_energy

typedef SBL::CSB::T_Molecular_potential_energy_numerical_gradient< Molecular_potential_energy, Potential_energy_parameters >	Molecular_potential_energy_numerical_gradient

Functions
def	get_env (name)
	accessing env variable More...

def	get_env_or_die (name)

def	make_modules_path (directory)
	Loading all modules of SBL, if they were not installed. More...