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typedef double | FT |
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typedef SBL::Models::T_Unit_system_traits_none_AKMA< FT > | UST_base |
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typedef SBL::Models::T_Unit_system_traits_for_potential_energy< UST_base > | Unit_system_traits |
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typedef std::vector< FT > | Conformation |
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typedef SBL::Models::T_Conformation_traits< Conformation > | Conformation_traits |
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typedef SBL::Models::T_Conformations_file_loader< Conformation > | Conformations_loader |
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typedef SBL::Models::T_Atom_with_hierarchical_info_traits | Particle_traits |
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typedef SBL::CSB::T_Particle_info_for_proteins< Particle_traits > | Particle_info |
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typedef SBL::CSB::T_Molecular_covalent_structure< Particle_info > | Covalent_structure_base |
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typedef SBL::CSB::T_Molecular_covalent_structure_builder_for_proteins< Covalent_structure_base > | Covalent_structure_builder |
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typedef SBL::IO::T_Molecular_covalent_structure_loader_from_PDB< Particle_traits, Covalent_structure_base, Covalent_structure_builder > | Covalent_structure_loader |
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typedef SBL::IO::T_Potential_energy_parameters< Covalent_structure_base, Unit_system_traits, FT > | Potential_energy_parameters_loader |
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typedef SBL::CSB::T_Molecular_potential_energy_structure_parameters_traits_optimal< Covalent_structure_base, Potential_energy_parameters_loader > | Structure_parameters_traits |
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typedef Structure_parameters_traits::Covalent_structure | Covalent_structure |
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typedef Structure_parameters_traits::Potential_energy_parameters | Potential_energy_parameters |
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typedef Structure_parameters_traits::Build_structure_parameters | Build_structure_parameters |
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typedef SBL::CSB::T_Bonded_particles_visitor< Covalent_structure > | Bonds_visitor |
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typedef SBL::CSB::T_Bond_angles_visitor< Covalent_structure > | Bond_angles_visitor |
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typedef SBL::CSB::T_Dihedral_angles_visitor< Covalent_structure > | Proper_angles_visitor |
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typedef SBL::CSB::T_Unbonded_particles_with_threshold_visitor< Covalent_structure, Conformation > | Non_bonded_visitor |
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typedef SBL::CSB::T_Molecular_potential_energy_bonded_contribution< Conformation, Covalent_structure, Potential_energy_parameters > | Bonded_contributions |
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typedef SBL::CSB::T_Molecular_potential_energy_Lennard_Jones_term< Conformation, Covalent_structure, Potential_energy_parameters > | Lennard_Jones_term |
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typedef SBL::CSB::T_Molecular_potential_energy_electrostatic_term< Conformation, Covalent_structure, Potential_energy_parameters > | Electrostatic_term |
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typedef SBL::CSB::T_Molecular_potential_energy_bond_length_gradient_harmonic< Conformation, Covalent_structure, Potential_energy_parameters > | Bond_length_gradient_term |
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typedef SBL::CSB::T_Molecular_potential_energy_bond_angle_gradient_harmonic< Conformation, Covalent_structure, Potential_energy_parameters > | Bond_angle_gradient_term |
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typedef SBL::CSB::T_Molecular_potential_energy_torsion_angle_gradient_periodic< Conformation, Covalent_structure, Potential_energy_parameters > | Torsion_angle_gradient_term |
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typedef SBL::CSB::T_Molecular_potential_energy_Lennard_Jones_gradient< Conformation, Covalent_structure, Potential_energy_parameters > | Lennard_Jones_gradient_term |
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typedef SBL::CSB::T_Molecular_potential_energy_electrostatic_gradient< Conformation, Covalent_structure, Potential_energy_parameters > | Electrostatic_gradient_term |
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typedef SBL::CSB::T_Molecular_potential_energy_contribution< Non_bonded_visitor, Lennard_Jones_term, Electrostatic_term > | Non_bonded_contributions |
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typedef SBL::CSB::T_Molecular_potential_energy_gradient_contribution< Bonds_visitor, Bond_length_gradient_term > | Bond_length_gradient_contribution |
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typedef SBL::CSB::T_Molecular_potential_energy_gradient_contribution< Bond_angles_visitor, Bond_angle_gradient_term > | Bond_angle_gradient_contribution |
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typedef SBL::CSB::T_Molecular_potential_energy_gradient_contribution< Proper_angles_visitor, Torsion_angle_gradient_term > | Torsion_angle_gradient_contribution |
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typedef SBL::CSB::T_Molecular_potential_energy_gradient_contribution< Non_bonded_visitor, Lennard_Jones_gradient_term > | Lennard_Jones_gradient_contribution |
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typedef SBL::CSB::T_Molecular_potential_energy_gradient_contribution< Non_bonded_visitor, Electrostatic_gradient_term > | Electrostatic_gradient_contribution |
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typedef Electrostatic_gradient_contribution::Molar_energy_gradient_quantity | Molar_energy_gradient_quantity |
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typedef SBL::CSB::T_Molecular_potential_energy< Bonded_contributions, Non_bonded_contributions > | Molecular_potential_energy |
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typedef SBL::CSB::T_Molecular_potential_energy_numerical_gradient< Molecular_potential_energy, Potential_energy_parameters > | Molecular_potential_energy_numerical_gradient |
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