Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
MISA_constructor Class Reference

Public Attributes

 adir
 
 verbose
 
 prefix
 
 to_align
 
 file_specs
 
 bound_pdb_complexes
 
 pdb_id2path
 
 windows
 
 all_MISA
 
 all_MISA_ids
 

Constructions

def __init__ (self, pdir, idir, odir, adir, verbose, prefix, to_align, file_specs, bound_pdb_complexes, pdb_id2path, windows)
 Default constructor. More...
 

Internal methods

def gather_chains_by_MISA_id (self)
 Gather all the chain by the relevant MISA id. More...
 
def run (self)
 Iterate over the MISA to run the processing
More...
 

Detailed Description

Construct and process all the MISAs. Gather the different chains by MISA id and run the processing of each of them.

Constructor & Destructor Documentation

◆ __init__()

def __init__ (   self,
  pdir,
  idir,
  odir,
  adir,
  verbose,
  prefix,
  to_align,
  file_specs,
  bound_pdb_complexes,
  pdb_id2path,
  windows 
)

Default constructor.

Member Function Documentation

◆ gather_chains_by_MISA_id()

def gather_chains_by_MISA_id (   self)

Gather all the chain by the relevant MISA id.

◆ run()

def run (   self)

Iterate over the MISA to run the processing

Member Data Documentation

◆ adir

adir

◆ all_MISA

all_MISA

◆ all_MISA_ids

all_MISA_ids

◆ bound_pdb_complexes

bound_pdb_complexes

◆ file_specs

file_specs

◆ pdb_id2path

pdb_id2path

◆ prefix

prefix

◆ to_align

to_align

◆ verbose

verbose

◆ windows

windows