Converts polynomial roots to embeddings using values defined in T_Tripeptide_constraints_to_polynomial. More...

#include <Tripeptide_loop_closure.hpp>

Public Types
typedef Algebraic_Kernel	AK

typedef T_Tripeptide_constraints_to_polynomial< AK >	self

typedef AK::Polynomial_1	Polynomial

typedef AK::Algebraic_real_1	Real

typedef CGAL::Gmpfr	NT

typedef Molecular_coordinates_utilities	MCU

typedef CGAL::Point_3< CGAL::Cartesian< NT > >	Point

typedef CGAL::Vector_3< CGAL::Cartesian< NT > >	Vector

typedef std::vector< Real >	Roots

typedef std::vector< std::array< NT, 27 > >	Solutions_embeddings

Modifiers
void	quaternion (Vector axis, NT quarter_ang, NT(&Quaternion)[4])

void	rotation_matrix (NT Quaternion[4], NT(&Rotation)[3][3])

void	matmul (NT ma[3][3], Vector mb, Vector &mc)

NT	calc_t1 (NT t0, NT t2, NT C0[3][3], NT C1[3][3], NT C2[3][3])

NT	calc_t2 (NT t0, NT Q[5][17], NT R[3][17])

void	operator() (const T_Tripeptide_anchors< NT > Anchors, Contants_for_embedding< NT > &Cnsts, Roots &rts, Solutions_embeddings &Coordinates)
	Anchors sovler interface of CGAL. More...

Detailed Description

template<class Algebraic_Kernel>
class SBL::CSB::T_TLC_polynomial_roots_to_embedings< Algebraic_Kernel >

Converts polynomial roots to embeddings using values defined in T_Tripeptide_constraints_to_polynomial.

Template Parameters

CGAL	Algebraic kernel used to specify the number types on polynomial object type used for the solver

Member Typedef Documentation

◆ AK

typedef Algebraic_Kernel AK

◆ MCU

typedef Molecular_coordinates_utilities MCU

◆ NT

typedef CGAL::Gmpfr NT

◆ Point

typedef CGAL::Point_3<CGAL::Cartesian<NT> > Point

◆ Polynomial

typedef AK::Polynomial_1 Polynomial

◆ Real

typedef AK::Algebraic_real_1 Real

◆ Roots

typedef std::vector<Real> Roots

◆ self

typedef T_Tripeptide_constraints_to_polynomial<AK> self

◆ Solutions_embeddings

typedef std::vector<std::array<NT,27> > Solutions_embeddings

◆ Vector

typedef CGAL::Vector_3<CGAL::Cartesian<NT> > Vector

Member Function Documentation

◆ calc_t1()

T_TLC_polynomial_roots_to_embedings< Algebraic_Kernel >::NT calc_t1	(	NT	t0,
		NT	t2,
		NT	C0[3][3],
		NT	C1[3][3],
		NT	C2[3][3]
	)

◆ calc_t2()

T_TLC_polynomial_roots_to_embedings< Algebraic_Kernel >::NT calc_t2	(	NT	t0,
		NT	Q[5][17],
		NT	R[3][17]
	)

◆ matmul()

void matmul	(	NT	ma[3][3],
		Vector	mb,
		Vector &	mc
	)

◆ operator()()

void operator()	(	const T_Tripeptide_anchors< NT >	Anchors,
		Contants_for_embedding< NT > &	Cnsts,
		Roots &	rts,
		Solutions_embeddings &	Coordinates
	)

Anchors sovler interface of CGAL.