Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
Reference Manuals

Packages

 Alignment_engines
 
 Alpha_complex_of_molecular_model
 
 Alpha_complexes_extensions
 
 Apurva
 
 Batch_manager
 
 Betti_numbers
 
 Binding_affinity_prediction
 
 Buried_surface_area
 
 Cell_complex_shelling_diagram
 
 Cluster_engines
 
 Conformational_ensemble_analysis
 
 Conformational_ensemble_comparison
 
 ConformationMoveset
 
 Connectivity_inference
 
 Correlated_motions_by_domain
 
 D_family_matching
 
 DB_manipulator
 
 Density_difference_based_clustering
 
 Dijkstra_shortest_paths_with_landmarks
 
 Directed_acyclic_graph
 
 Earth_mover_distance
 
 Energy_landscape_analysis
 
 Energy_landscape_comparison
 
 Frechet_mean_S1
 
 FunChaT
 
 Genetrank
 
 Greedy_selection
 
 Hamiltonian_Monte_Carlo
 
 HMMER_Wrapper
 
 Iterative_alignment
 
 Kpax
 
 Landscape_explorer
 
 Maximum_clique
 
 Minimal_oriented_spanning_forest
 
 Module_base
 
 Molecular_conformation
 
 Molecular_coordinates
 
 Molecular_covalent_structure
 
 Molecular_cradle
 
 Molecular_distances
 
 Molecular_distances_flexible
 
 Molecular_geometric_model_classifier
 
 Molecular_interfaces
 
 Molecular_potential_energy
 
 Molecular_structure_classifier
 
 Molecular_system
 
 Molecular_viewers
 Viewer writing in VMD file format.
 
 MolecularGeometryLoader
 
 MolecularSystemLabelsTraits
 
 Morse_Smale_Witten_chain_complex
 
 Morse_theory_based_analyzer
 
 Multiple_archives_serialization
 
 Multiple_interface_string_alignment
 inspired from https://biopython3.org/DIST/docs/api/Bio.PDB.Dice-pysrc.html#ChainSelector To filter the atoms from the new .pdb file
 
 Nearest_neighbors_graph_builder
 
 Ordered_forest_edit_distance
 
 PALSE
 
 ParticleAnnotator
 
 ParticleTraits
 
 Point_cloud_rigid_registration_3
 
 Pointwise_interactions
 
 Product_graph
 
 Protein_representation
 
 Protein_sequence_annotator
 
 Random_generation
 
 Real_value_function_minimizer
 
 Rotation_3
 
 Space_filling_model_coarse_graining
 
 Space_filling_model_interface
 
 Space_filling_model_interface_finder
 
 Space_filling_model_shelling_diagram_comparison
 
 Space_filling_model_shelling_diagram_surface_encoding
 
 Space_filling_model_surface_volume
 
 Spatial_search
 
 Specialized_iterators
 
 Spectral_domain_explorer
 
 Spherical_kernel_extension_3
 
 Structural_motifs
 
 Tertiary_quaternary_structure_annotator
 
 Transition_graph_of_energy_landscape_builders
 
 Transition_graph_traits
 Compressed means that vertices are the minima and edges are the transitions.
 
 Triangulations_extensions_3
 
 Tripeptide_loop_closure
 
 Union_find
 
 Union_of_balls_boundary_3
 
 Union_of_balls_boundary_patch_shelling_3
 
 Union_of_balls_medial_axis_3
 
 Union_of_balls_mesh_3
 
 Union_of_balls_surface_volume_3
 
 UnitSystemTraits
 
 Wang_Landau
 

Description