T_Tripeptide_constraints_to_polynomial< Algebraic_Kernel > Class Template Reference

Converts the Tripeptide contraints given to a 16th degree polynomial. More...

#include <Tripeptide_loop_closure.hpp>

Public Types
typedef Algebraic_Kernel	AK
typedef T_Tripeptide_constraints_to_polynomial< AK >	self
typedef AK::Polynomial_1	Polynomial
typedef AK::Algebraic_real_1	Real
typedef CGAL::Gmpfr	NT
typedef Molecular_coordinates_utilities	MCU
typedef CGAL::Point_3< CGAL::Cartesian< NT > >	Point
typedef CGAL::Vector_3< CGAL::Cartesian< NT > >	Vector

Modifiers
void	poly_mul1 (NT u1[17], NT u2[17], int p1, int p2, NT(&u3)[17], int &p3)
void	poly_sub1 (NT u1[17], NT u2[17], int p1, int p2, NT(&u3)[17], int &p3)
void	poly_mul_sub1 (NT u1[17], NT u2[17], NT u3[17], NT u4[17], int p1, int p2, int p3, int p4, NT(&u5)[17], int &p5)
void	poly_mul_sub2 (NT u1[5][5], NT u2[5][5], NT u3[5][5], NT u4[5][5], int p1[2], int p2[2], int p3[2], int p4[2], NT(&u5)[5][5], int(&p5)[2])
void	poly_mul2 (NT u1[5][5], NT u2[5][5], int p1[2], int p2[2], NT(&u3)[5][5], int(&p3)[2])
void	poly_sub2 (NT u1[5][5], NT u2[5][5], int p1[2], int p2[2], NT(&u3)[5][5], int(&p3)[2])
void	operator() (const T_Tripeptide_constraints< NT > &tlc_constraints, Polynomial &p_Output, Contants_for_embedding< NT > &Cnsts)
	Create a polypeptide chain in this protein. More...

Detailed Description

template<class Algebraic_Kernel>
class SBL::CSB::T_Tripeptide_constraints_to_polynomial< Algebraic_Kernel >

Converts the Tripeptide contraints given to a 16th degree polynomial.

Converts the Tripeptide contraints given to a 16th degree polynomial.

Template Parameters

CGAL	Algebraic kernel used to specify the number types on polynomial object type used for the solver

Member Typedef Documentation

AK

typedef Algebraic_Kernel AK

MCU

typedef Molecular_coordinates_utilities MCU

NT

typedef CGAL::Gmpfr NT

Point

typedef CGAL::Point_3<CGAL::Cartesian<NT> > Point

Polynomial

typedef AK::Polynomial_1 Polynomial

Real

typedef AK::Algebraic_real_1 Real

self

typedef T_Tripeptide_constraints_to_polynomial<AK> self

Vector

typedef CGAL::Vector_3<CGAL::Cartesian<NT> > Vector

Member Function Documentation

operator()()

void operator()	(	const T_Tripeptide_constraints< NT > &	tlc_constraints,
		Polynomial &	p_Output,
		Contants_for_embedding< NT > &	Cnsts
	)

Create a polypeptide chain in this protein.

Parameters

tlc_constraints	constraints in the internal coordinates and anchors of the loop closure
p_Output	Algebraic polynomial object from CGAL
Cnsts	Constants used to embedd the solution once the roots of the polynomial are found

poly_mul1()

void poly_mul1	(	NT	u1[17],
		NT	u2[17],
		int	p1,
		int	p2,
		NT(&)	u3[17],
		int &	p3
	)

poly_mul2()

void poly_mul2	(	NT	u1[5][5],
		NT	u2[5][5],
		int	p1[2],
		int	p2[2],
		NT(&)	u3[5][5],
		int(&)	p3[2]
	)

poly_mul_sub1()

void poly_mul_sub1	(	NT	u1[17],
		NT	u2[17],
		NT	u3[17],
		NT	u4[17],
		int	p1,
		int	p2,
		int	p3,
		int	p4,
		NT(&)	u5[17],
		int &	p5
	)

poly_mul_sub2()

void poly_mul_sub2	(	NT	u1[5][5],
		NT	u2[5][5],
		NT	u3[5][5],
		NT	u4[5][5],
		int	p1[2],
		int	p2[2],
		int	p3[2],
		int	p4[2],
		NT(&)	u5[5][5],
		int(&)	p5[2]
	)

poly_sub1()

void poly_sub1	(	NT	u1[17],
		NT	u2[17],
		int	p1,
		int	p2,
		NT(&)	u3[17],
		int &	p3
	)

poly_sub2()

void poly_sub2	(	NT	u1[5][5],
		NT	u2[5][5],
		int	p1[2],
		int	p2[2],
		NT(&)	u3[5][5],
		int(&)	p3[2]
	)