T_Alignment_sequence< ResidueBase > Class Template Reference

Representation of a sequence of residues in the alignement engines Representation of a sequence of residues in the alignement engines. More...

#include "Alignment_sequence.hpp"

Public Types
typedef T_Alignment_residue< ResidueBase >	Residue
	Representation of a residue in the sequence.
typedef Residue	Alignment_unit
	Representation of the unit to align, here a residue.
typedef Residue::Residue_name	Alignment_unit_name
	Name used for representing the unit to align, here the one letter code of a residue.
typedef int	Alignment_unit_rep
	Identifier of the unit to align, here the residue sequence number of the residue.

Constructors
template<class InputIterator>
	T_Alignment_sequence (InputIterator begin, InputIterator end)
	Init a sequence from a range of base residues.

Detailed Description

template<class ResidueBase>
class SBL::CSB::T_Alignment_sequence< ResidueBase >

Representation of a sequence of residues in the alignement engines Representation of a sequence of residues in the alignement engines.

Representation of a sequence of residues in the alignement engines.

Template Parameters

ResidueBase

Base representation of a residue, e.g from PDB / mmCIF formats

Member Typedef Documentation

Alignment_unit

template<class ResidueBase>

typedef Residue Alignment_unit

Representation of the unit to align, here a residue.

Alignment_unit_name

template<class ResidueBase>

typedef Residue::Residue_name Alignment_unit_name

Name used for representing the unit to align, here the one letter code of a residue.

Alignment_unit_rep

template<class ResidueBase>

typedef int Alignment_unit_rep

Identifier of the unit to align, here the residue sequence number of the residue.

Residue

template<class ResidueBase>

typedef T_Alignment_residue<ResidueBase> Residue

Representation of a residue in the sequence.

Constructor & Destructor Documentation

T_Alignment_sequence()

template<class ResidueBase>

template<class InputIterator>

T_Alignment_sequence ( InputIterator begin, InputIterator end )

inline

Init a sequence from a range of base residues.