![]() |
Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
|
Given two structures, align them using Kpax_seeder. More...
#include <Seeder_basic.hpp>
Public Types | |
typedef StructureType | Structure_type |
typedef T_Seeder_basic< Structure_type > | Self |
typedef Structure_type::value_type | Residue |
typedef std::pair< int, int > | Aligned_pair |
typedef double | Score_type |
typedef std::pair< Score_type, Aligned_pair > | Seed_pair |
typedef std::vector< Seed_pair > | Seed_type |
typedef std::vector< Seed_type >::iterator | Seed_iterator |
Constructors | |
T_Seeder_basic () | |
Default constructor. More... | |
Internal public methods | |
Score_type | operator() (const Structure_type &struct_1, const Structure_type &struct_2) |
void | add_seed (Seed_type seed) |
std::vector< Seed_type > & | get_seeds () |
Seed_iterator | seeds_begin () |
Seed_iterator | seeds_end () |
std::size_t | get_num_seeds () |
static void | add_options (boost::program_options::options_description &options) |
Given two structures, align them using Kpax_seeder.
Given two structures, align them using Kpax_seeder.
typedef std::pair<int, int> Aligned_pair |
typedef Structure_type::value_type Residue |
typedef double Score_type |
typedef std::vector<Seed_type>::iterator Seed_iterator |
typedef std::pair<Score_type, Aligned_pair> Seed_pair |
typedef T_Seeder_basic<Structure_type> Self |
typedef StructureType Structure_type |
|
inline |
Default constructor.
|
inlinestatic |
|
inline |
|
inline |
|
inline |
|
inline |
|
inline |
|
inline |