Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
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Internal Methods | |
def | convert_PDB_header_to_XML_ElementTree (header) |
Convert the header of a PDB file to an XML ETree. More... | |
def | convert_PDB_atom_to_XML_ElementTree (atom) |
Convert a PDB atom to an XML ETree. More... | |
def | convert_PDB_residue_to_XML_ElementTree (residue) |
Convert a PDB residue to an XML ETree. More... | |
def | convert_PDB_chain_to_XML_ElementTree (chain) |
Convert a PDB chain to an XML ETree. More... | |
def | convert_PDB_model_to_XML_ElementTree (model) |
Convert a PDB model to an XML ETree. More... | |
def | convert_PDB_structure_to_XML_ElementTree (structure) |
Convert a PDB structure to an XML ETree. More... | |
def | convert_PDB_to_XML_Etree (filename) |
Convert a PDB file to an XML ETree. More... | |
Load PDB files | |
def | load_PDB_file (filename) |
Function that load a PDB file from filename and convert the output dictionary to a XML tree of this database. More... | |
def | load_PDB_files (filelist) |
Function that load all PDB files in the filelist and convert the output dictionaries to XML trees of this database. More... | |
def | load_PDB_files_from_directory (input_dir, regex="") |
Function that load all PDB files in the input directory matching the regexp. More... | |
Manipulations between the PDB format from BioPython and XML Etrees.
Manipulations between the PDB format from BioPython and XML Etrees. The class allows loading directly a text PDB file into an ETree, without using the PDBML format.
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Convert a PDB atom to an XML ETree.
Should not be called directly !
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Convert a PDB chain to an XML ETree.
Should not be called directly !
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Convert the header of a PDB file to an XML ETree.
Should not be called directly !
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Convert a PDB model to an XML ETree.
Should not be called directly !
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Convert a PDB residue to an XML ETree.
Should not be called directly !
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Convert a PDB structure to an XML ETree.
Should not be called directly !
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Convert a PDB file to an XML ETree.
Should not be called directly !
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Function that load a PDB file from filename and convert the output dictionary to a XML tree of this database.
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Function that load all PDB files in the filelist and convert the output dictionaries to XML trees of this database.
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Function that load all PDB files in the input directory matching the regexp.