BioPDB_vs_XML_Etree Class Reference

Internal Methods
	convert_PDB_header_to_XML_ElementTree (header)
	Convert the header of a PDB file to an XML ETree.
	convert_PDB_atom_to_XML_ElementTree (atom)
	Convert a PDB atom to an XML ETree.
	convert_PDB_residue_to_XML_ElementTree (residue)
	Convert a PDB residue to an XML ETree.
	convert_PDB_chain_to_XML_ElementTree (chain)
	Convert a PDB chain to an XML ETree.
	convert_PDB_model_to_XML_ElementTree (model)
	Convert a PDB model to an XML ETree.
	convert_PDB_structure_to_XML_ElementTree (structure)
	Convert a PDB structure to an XML ETree.
	convert_PDB_to_XML_Etree (filename)
	Convert a PDB file to an XML ETree.

Load PDB files
	load_PDB_file (filename)
	Function that load a PDB file from filename and convert the output dictionary to a XML tree of this database.
	load_PDB_files (filelist)
	Function that load all PDB files in the filelist and convert the output dictionaries to XML trees of this database.
	load_PDB_files_from_directory (input_dir, regex="")
	Function that load all PDB files in the input directory matching the regexp.

Detailed Description

Manipulations between the PDB format from BioPython and XML Etrees.

Manipulations between the PDB format from BioPython and XML Etrees. The class allows loading directly a text PDB file into an ETree, without using the PDBML format.

Member Function Documentation

convert_PDB_atom_to_XML_ElementTree()

convert_PDB_atom_to_XML_ElementTree ( atom )

static

Convert a PDB atom to an XML ETree.

Should not be called directly !

convert_PDB_chain_to_XML_ElementTree()

convert_PDB_chain_to_XML_ElementTree ( chain )

static

Convert a PDB chain to an XML ETree.

Should not be called directly !

convert_PDB_header_to_XML_ElementTree()

convert_PDB_header_to_XML_ElementTree ( header )

static

Convert the header of a PDB file to an XML ETree.

Should not be called directly !

convert_PDB_model_to_XML_ElementTree()

convert_PDB_model_to_XML_ElementTree ( model )

static

Convert a PDB model to an XML ETree.

Should not be called directly !

convert_PDB_residue_to_XML_ElementTree()

convert_PDB_residue_to_XML_ElementTree ( residue )

static

Convert a PDB residue to an XML ETree.

Should not be called directly !

convert_PDB_structure_to_XML_ElementTree()

convert_PDB_structure_to_XML_ElementTree ( structure )

static

Convert a PDB structure to an XML ETree.

Should not be called directly !

convert_PDB_to_XML_Etree()

convert_PDB_to_XML_Etree ( filename )

static

Convert a PDB file to an XML ETree.

Should not be called directly !

load_PDB_file()

load_PDB_file ( filename )

static

Function that load a PDB file from filename and convert the output dictionary to a XML tree of this database.

load_PDB_files()

load_PDB_files ( filelist )

static

Function that load all PDB files in the filelist and convert the output dictionaries to XML trees of this database.

load_PDB_files_from_directory()

load_PDB_files_from_directory ( input_dir, regex = "" )

static

Function that load all PDB files in the input directory matching the regexp.