Label_selector Class Reference

Static Public Attributes
string	path1 = './lrmsd_matrices/'
	Step 1 : write rmsd distance matrix per subdomain per state in a folder. More...
string	path2 = './lrmsd_stat/'
	Step 2 : write lrmsd statistics (lrmsd average, median, std, min and max) intra- and inter-state. More...
	writer_3_options = Cradle_utils_label_selection_options(self.m_options.m_idir, self.m_options.m_pdbfiles, self.m_options.m_pdb_info, self.m_options.m_state_map_file, self.m_options.m_spec_files)
	Step 3 : compute mean displacement per subdomain from bfactor. More...
	selector_1 = Subdomain_Selector_1(path2)
	Step 4 : write summary table comparing mean displacement to lrmsd per subdomain intra and inter-state. More...

Detailed Description

Selection of subdomains which are dynamic, see paper The selection of dynamic subdomains hinges on 4 steps 1) Compute RMSDcomb for specifed subdomains 2) write statistics of RMSDcomb per subdomain intra- and inter-states 3) compute mean displacement per subdomain 4) Write table comparing mean displacement to lrmsd per subdomain intra- and inter-states.

Member Data Documentation

path1

string path1 = './lrmsd_matrices/'

static

Step 1 : write rmsd distance matrix per subdomain per state in a folder.

path2

string path2 = './lrmsd_stat/'

static

Step 2 : write lrmsd statistics (lrmsd average, median, std, min and max) intra- and inter-state.

selector_1

selector_1 = Subdomain_Selector_1(path2)

static

Step 4 : write summary table comparing mean displacement to lrmsd per subdomain intra and inter-state.

writer_3_options

writer_3_options = Cradle_utils_label_selection_options(self.m_options.m_idir, self.m_options.m_pdbfiles, self.m_options.m_pdb_info, self.m_options.m_state_map_file, self.m_options.m_spec_files)

static

Step 3 : compute mean displacement per subdomain from bfactor.