Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
Dendogram_processor Class Reference

Public Member Functions

def __init__ (self, cradle_utils_dendogram_options)
 
def read_check_color_map (self)
 
def map_defined_cluster (self)
 
def get_state_of_all_monomers (self, labels)
 
def get_sub_fc (self, node, state_of_monomers, BHST)
 
def correctness_checker (self, labels, rootnode)
 
def run_analysis (self, ltype, name)
 
def run (self)
 

Public Attributes

 m_options
 
 re_rmsd_type
 
 re_correctness
 
 state_map
 
 state_of_monomers
 
 df
 
 distArray
 
 row_dendr
 
 color_map
 
 defined_clusters
 
 ofname
 

Detailed Description

Perform hierachical clustering draw associated dendogram and can compute correctness of clustering if asked.

Constructor & Destructor Documentation

◆ __init__()

def __init__ (   self,
  cradle_utils_dendogram_options 
)

Member Function Documentation

◆ correctness_checker()

def correctness_checker (   self,
  labels,
  rootnode 
)

◆ get_state_of_all_monomers()

def get_state_of_all_monomers (   self,
  labels 
)

◆ get_sub_fc()

def get_sub_fc (   self,
  node,
  state_of_monomers,
  BHST 
)

◆ map_defined_cluster()

def map_defined_cluster (   self)

◆ read_check_color_map()

def read_check_color_map (   self)

◆ run()

def run (   self)

◆ run_analysis()

def run_analysis (   self,
  ltype,
  name 
)

Member Data Documentation

◆ color_map

color_map

◆ defined_clusters

defined_clusters

◆ df

df

◆ distArray

distArray

◆ m_options

m_options

◆ ofname

ofname

◆ re_correctness

re_correctness

◆ re_rmsd_type

re_rmsd_type

◆ row_dendr

row_dendr

◆ state_map

state_map

◆ state_of_monomers

state_of_monomers