Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
Cradle_step3 Class Reference

Public Member Functions

def __init__ (self, cradle_step1_options)
 
def get_spect_files (self)
 
def get_pdb_info (self)
 
def load_pdb_files (self, directory)
 
def read_check_color_map (self)
 
def get_state_of_all_monomers (self)
 
def get_info_prot_states (self)
 
def get_pdbid (self, pdb, info_pdb)
 
def prep_run_info (self, filename_f, monomers_per_states)
 
def prep_run_cmd_for_two_chains (self, infos)
 
def bif_calculator (self)
 
def load_result_files (self, folder)
 
def bif_analysis (self, folder)
 
def bif_result_writer (self)
 
def run (self)
 

Public Attributes

 m_options
 
 spec_per_protein
 
 domains
 
 re_domains
 
 re_pdb_info
 
 re_inter_subdomains
 
 state_map
 
 all_needed_info
 
 specfiles
 
 files
 
 info_pdb
 

Detailed Description

Compute interfaces for given pdb files for every specified subdomains. Compute interfaces for given pdb files for every specified subdomains.

Constructor & Destructor Documentation

◆ __init__()

def __init__ (   self,
  cradle_step1_options 
)

Member Function Documentation

◆ bif_analysis()

def bif_analysis (   self,
  folder 
)

◆ bif_calculator()

def bif_calculator (   self)

◆ bif_result_writer()

def bif_result_writer (   self)

◆ get_info_prot_states()

def get_info_prot_states (   self)

◆ get_pdb_info()

def get_pdb_info (   self)

◆ get_pdbid()

def get_pdbid (   self,
  pdb,
  info_pdb 
)

◆ get_spect_files()

def get_spect_files (   self)

◆ get_state_of_all_monomers()

def get_state_of_all_monomers (   self)

◆ load_pdb_files()

def load_pdb_files (   self,
  directory 
)

◆ load_result_files()

def load_result_files (   self,
  folder 
)

◆ prep_run_cmd_for_two_chains()

def prep_run_cmd_for_two_chains (   self,
  infos 
)

◆ prep_run_info()

def prep_run_info (   self,
  filename_f,
  monomers_per_states 
)

◆ read_check_color_map()

def read_check_color_map (   self)

◆ run()

def run (   self)

Member Data Documentation

◆ all_needed_info

all_needed_info

◆ domains

domains

◆ files

files

◆ info_pdb

info_pdb

◆ m_options

m_options

◆ re_domains

re_domains

◆ re_inter_subdomains

re_inter_subdomains

◆ re_pdb_info

re_pdb_info

◆ spec_per_protein

spec_per_protein

◆ specfiles

specfiles

◆ state_map

state_map