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    Structural Bioinformatics Library
    
   Template C++ / Python API for developping structural bioinformatics applications. 
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Model of ParticleAnnotator for attributing any annotation to a particle. More...
#include <Generic_annotator.hpp>
Public Member Functions | |
| boost::program_options::options_description | add_options (void) | 
| Virtual method for adding options to the module.  More... | |
| bool | check_options (std::string &message) const | 
| Checks that the input options' values are coherent.  More... | |
| std::string | get_output_prefix (void) const | 
| Returns a prefix that concatains the input line options used when running the module.  More... | |
| bool | load (unsigned verbose, std::ostream &out) | 
| Load function.  More... | |
| std::string | get_name (void) const | 
| Return the name of the class itself.  More... | |
Static Public Member Functions | |
| static boost::program_options::options_description *& | get_options (void) | 
| Access to the options' description of the module.  More... | |
Management | |
| void | set_loader_instance_name (const std::string &loader_instance_name) | 
| const std::string & | get_loader_instance_name (void) const | 
Model of ParticleAnnotator for attributing any annotation to a particle.
It loads the annotations from a file into a map: the format of the file should be, at each line, the key foloowing by the annotation. The key should be a loadable value that alows a given particle to recognize its annotation.
| KeyType | Type of the key of an annotation. | 
| AnnotationType | Type of the annotation. | 
| MakeKey | Functor taking a particle as input and returning its key. | 
| SetAnnotation | Functor taking a particle and its annotation as input and setting the annotation of the particle. | 
      
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  inlinevirtual | 
Virtual method for adding options to the module.
Reimplemented from T_Module_option_description< Dummy >.
      
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  inlinevirtual | 
Checks that the input options' values are coherent.
Reimplemented from T_Module_option_description< Dummy >.
      
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  inlinevirtual | 
Return the name of the class itself.
Reimplemented from Loader_base.
      
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  inlinestaticinherited | 
Access to the options' description of the module.
      
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  inlinevirtual | 
Returns a prefix that concatains the input line options used when running the module.
Reimplemented from T_Module_option_description< Dummy >.
      
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  inlinevirtual | 
Load function.
| verbose | Verbosity level. | |
| [out] | out | Output stream. | 
Reimplemented from Loader_base.