Viewer writing in VMD file format. More...

#include <VMD_viewer.hpp>

Parameters
unsigned	get_color_id (const std::string &color) const
	Returns the index associated to a given color. More...

unsigned	get_color_id (void) const
	Returns the current color index. More...

void	set_color_id (unsigned color_id)
	Sets the current color index. More...

bool	is_transparent (void) const
	Checks that the next object will be viewn using transparent material. More...

void	set_transparent (bool is_transparent)
	Sets the transparent tag. More...

bool	is_visible (void) const
	Checks that the next object will be visible. More...

void	set_visible (bool is_visible)
	Sets the visible tag. More...

bool	is_cloning (void) const
	Checks that the next object will copy the last molecule if any. More...

void	set_cloning (bool is_cloning)
	Sets the cloning tag. More...

unsigned	get_vertex_resolution (void) const
	Returns the number of facets around a sphere representing a vertex. More...

void	set_vertex_resolution (unsigned resolution)
	Sets the number of facets around a sphere representing a vertex. More...

unsigned	get_circle_resolution (void) const
	Returns the number of segments around a circular arc. More...

void	set_circle_resolution (unsigned resolution)
	Sets the number of segments around a circular arc. More...

double	get_vertex_radius (void) const
	Returns the radius of a sphere representing a vertex. More...

void	set_vertex_radius (double radius)
	Sets the radius of a sphere representing a vertex. More...

double	get_edge_radius (void) const
	Returns the radius of a cylinder representing an edge. More...

void	set_edge_radius (double radius)
	Sets the radius of a cylinder representing an edge. More...

double	get_infinite_factor (void) const
	Returns the multiplicative factor used for representing infinite objects (e.g a line). More...

void	set_infinite_factor (double factor)
	Sets the multiplicative factor used for representing infinite objects (e.g a line). More...

Viewings
void	add_new_representation (void)
	Creates a new representation of the current molecule in VMD. More...

void	delete_first_representation (void)
	Deletes the first representation of the current molecule in VMD. More...

void	set_representation (const std::string &rep)
	Sets the mode of the current representation of the current molecule in VMD. More...

void	set_color (const std::string &color)
	Sets the color of the current representation of the current molecule in VMD. More...

void	set_color (std::size_t color_id)
	Sets the current color index. More...

void	set_graphics_color (const std::string &color)
	Sets the color of the current representation of the current molecule in VMD. More...

void	set_graphics_transparent (bool is_transparent)
	Sets the type of material to use (opaque or transparent) for the current molecule in VMD. More...

void	set_top_molecule (const std::string &mol_name)
	Sets the molecule with the input name as the current molecule in VMD. More...

void	make_new_molecule (const std::string &mol_name)
	Creates a new molecule in VMD. More...

void	make_add_molecule (const std::string &filename)
	Loads a molecule to the top molecule in VMD. More...

void	make_add_molecules_with_index (const std::string &prefix, const std::string &extension, unsigned index)
	Loads a list of molecules to the top molecule in VMD, from the index represented by the number of loaded frames to the input index. The filename of molecules is built as : <prefix><index><extension> More...

void	finalize_molecule (void)
	Finalizes the molecule: here it does nothing. More...

Detailed Description

Viewer writing in VMD file format.

Constructed with an output stream, it uses the output stream operator for writing in a file the corresponding objects in VMD format. For each object passed to the operator, the VMD_view method or struct should be defined.

Member Function Documentation

◆ add_new_representation()

void add_new_representation ( void )

inlineinherited

Creates a new representation of the current molecule in VMD.

◆ delete_first_representation()

void delete_first_representation ( void )

inlineinherited

Deletes the first representation of the current molecule in VMD.

◆ finalize_molecule()

void finalize_molecule ( void )

inlineinherited

Finalizes the molecule: here it does nothing.

◆ get_circle_resolution()

unsigned get_circle_resolution ( void ) const

inlineinherited

Returns the number of segments around a circular arc.

◆ get_color_id() [1/2]

unsigned get_color_id ( const std::string & color ) const

inlineinherited

Returns the index associated to a given color.

If the string does not represent a known color, it returns 0 (blue).

◆ get_color_id() [2/2]

unsigned get_color_id ( void ) const

inlineinherited

Returns the current color index.

◆ get_edge_radius()

double get_edge_radius ( void ) const

inlineinherited

Returns the radius of a cylinder representing an edge.

◆ get_infinite_factor()

double get_infinite_factor ( void ) const

inlineinherited

Returns the multiplicative factor used for representing infinite objects (e.g a line).

◆ get_vertex_radius()

double get_vertex_radius ( void ) const

inlineinherited

Returns the radius of a sphere representing a vertex.

◆ get_vertex_resolution()

unsigned get_vertex_resolution ( void ) const

inlineinherited

Returns the number of facets around a sphere representing a vertex.

◆ is_cloning()

bool is_cloning ( void ) const

inlineinherited

Checks that the next object will copy the last molecule if any.

◆ is_transparent()

bool is_transparent ( void ) const

inlineinherited

Checks that the next object will be viewn using transparent material.

◆ is_visible()

bool is_visible ( void ) const

inlineinherited

Checks that the next object will be visible.

◆ make_add_molecule()

void make_add_molecule ( const std::string & filename )

inlineinherited

Loads a molecule to the top molecule in VMD.

◆ make_add_molecules_with_index()

void make_add_molecules_with_index	(	const std::string &	prefix,
		const std::string &	extension,
		unsigned	index
	)

inlineinherited

Loads a list of molecules to the top molecule in VMD, from the index represented by the number of loaded frames to the input index. The filename of molecules is built as : <prefix><index><extension>

◆ make_new_molecule()

void make_new_molecule ( const std::string & mol_name )

inlineinherited

Creates a new molecule in VMD.

◆ set_circle_resolution()

void set_circle_resolution ( unsigned resolution )

inlineinherited

Sets the number of segments around a circular arc.

◆ set_cloning()

void set_cloning ( bool is_cloning )

inlineinherited

Sets the cloning tag.

◆ set_color() [1/2]

void set_color ( const std::string & color )

inlineinherited

Sets the color of the current representation of the current molecule in VMD.

◆ set_color() [2/2]

void set_color ( std::size_t color_id )

inlineinherited

Sets the current color index.

◆ set_color_id()

void set_color_id ( unsigned color_id )

inlineinherited

Sets the current color index.

◆ set_edge_radius()

void set_edge_radius ( double radius )

inlineinherited

Sets the radius of a cylinder representing an edge.

◆ set_graphics_color()

void set_graphics_color ( const std::string & color )

inlineinherited

Sets the color of the current representation of the current molecule in VMD.

◆ set_graphics_transparent()

void set_graphics_transparent ( bool is_transparent )

inlineinherited

Sets the type of material to use (opaque or transparent) for the current molecule in VMD.

◆ set_infinite_factor()

void set_infinite_factor ( double factor )

inlineinherited

Sets the multiplicative factor used for representing infinite objects (e.g a line).

◆ set_representation()

void set_representation ( const std::string & rep )

inlineinherited

Sets the mode of the current representation of the current molecule in VMD.

◆ set_top_molecule()

void set_top_molecule ( const std::string & mol_name )

inlineinherited

Sets the molecule with the input name as the current molecule in VMD.

◆ set_transparent()

void set_transparent ( bool is_transparent )

inlineinherited

Sets the transparent tag.

◆ set_vertex_radius()

void set_vertex_radius ( double radius )

inlineinherited

Sets the radius of a sphere representing a vertex.

◆ set_vertex_resolution()

void set_vertex_resolution ( unsigned resolution )

inlineinherited

Sets the number of facets around a sphere representing a vertex.

◆ set_visible()

void set_visible ( bool is_visible )

inlineinherited

Sets the visible tag.

Parameters

Viewings

Detailed Description

Member Function Documentation

◆ add_new_representation()

◆ delete_first_representation()

◆ finalize_molecule()

◆ get_circle_resolution()

◆ get_color_id() [1/2]

◆ get_color_id() [2/2]

◆ get_edge_radius()

◆ get_infinite_factor()

◆ get_vertex_radius()

◆ get_vertex_resolution()

◆ is_cloning()

◆ is_transparent()

◆ is_visible()

◆ make_add_molecule()

◆ make_add_molecules_with_index()

◆ make_new_molecule()

◆ set_circle_resolution()

◆ set_cloning()

◆ set_color() [1/2]

◆ set_color() [2/2]

◆ set_color_id()

◆ set_edge_radius()

◆ set_graphics_color()

◆ set_graphics_transparent()

◆ set_infinite_factor()

◆ set_representation()

◆ set_top_molecule()

◆ set_transparent()

◆ set_vertex_radius()

◆ set_vertex_resolution()

◆ set_visible()