Container for Molecular interface connected components that share the same interface. More...

#include <Molecular_interface_data_structure_base.hpp>

Public Types
typedef MolecularInterfaceConnectedComponent	Connected_component
	Alias for the template parameter. More...

Labels Types
typedef MolecularInterfaceConnectedComponent::Partner_labels_traits	Partner_labels_traits
	Traits class providing the labels for the partners. More...

typedef MolecularInterfaceConnectedComponent::Mediator_labels_traits	Mediator_labels_traits
	Traits class providing the labels for the mediators. More...

typedef MolecularInterfaceConnectedComponent::Partner_label	Partner_label
	System's label associated to a partner. More...

typedef MolecularInterfaceConnectedComponent::Mediator_label	Mediator_label
	System's label associated to a mediator. More...

Iterator types
typedef Base::const_iterator	Connected_components_iterator
	Iterator over the list of connected components. More...

typedef CADS::T_Container_of_containers_const_iterator< Connected_components_iterator >	Contacts_iterator
	Iterator over the interface edges in all connected components. More...

typedef boost::transform_iterator< Get_frontier, Connected_components_iterator >	Frontier_cc_iterator
	Iterator over the interface facets bording all connected components. More...

typedef CADS::T_Container_of_containers_const_iterator< Frontier_cc_iterator >	Contact_order_3_iterator
	Iterator over the border facets in all connected components. More...

typedef MolecularInterfaceConnectedComponent::Is_frontier	Is_frontier

typedef MolecularInterfaceConnectedComponent::Is_not_frontier	Is_not_frontier

typedef MolecularInterfaceConnectedComponent::Get_contact_order_3	Get_contact_order_3

typedef boost::filter_iterator< typename MolecularInterfaceConnectedComponent::Is_frontier, Contact_order_3_iterator >	Contact_order_3_frontier_iterator

typedef boost::filter_iterator< typename MolecularInterfaceConnectedComponent::Is_not_frontier, Contact_order_3_iterator >	Not_frontier_iterator

typedef boost::transform_iterator< typename MolecularInterfaceConnectedComponent::Get_contact_order_3, Contact_order_3_frontier_iterator >	Frontier_iterator

typedef MolecularInterfaceConnectedComponent::Particles_iterator	Particles_iterator

typedef boost::filter_iterator< Have_labels, Particles_iterator >	Particles_of_label_iterator
	Iterator over the vertices in all connected components with a label having as ancestor a given label. More...

typedef boost::filter_iterator< Have_labels, Contacts_iterator >	Contacts_of_label_iterator
	Iterator over the edges in all connected components with labels having as ancestors the given labels. More...

Constructors
	T_Molecular_interface_data_structure_base (void)
	Default constructor. Do not initialize anything. More...

template<class InputIterator , class MolecularStructureClassifier >
	T_Molecular_interface_data_structure_base (InputIterator begin, InputIterator end, MolecularStructureClassifier &classifier)
	Constructor used for bicolor and mediated interface. More...

template<class InputIterator , class MolecularStructureClassifier >
	T_Molecular_interface_data_structure_base (Partner_label partner_1, Partner_label partner_2, InputIterator begin, InputIterator end, MolecularStructureClassifier &classifier)

template<class InputIterator , class MolecularStructureClassifier >
	T_Molecular_interface_data_structure_base (Partner_label partner_1, Partner_label partner_2, Mediator_label mediator, InputIterator begin, InputIterator end, MolecularStructureClassifier &classifier)

Connected Components
unsigned	get_number_of_connected_components (void) const
	Access to the number of connected components. More...

Connected_components_iterator	connected_components_begin (void) const
	Starts the set of connected components of this interface. More...

Connected_components_iterator	connected_components_end (void) const
	Terminates the set of connected components of this interface. More...

Particles
unsigned	get_number_of_particles (void) const
	Access to the sum of number of vertices of the connected components. More...

unsigned	get_number_of_particles (Partner_label partner) const
	Access to the sum of number of vertices of the connected components with a label having partner as ancestor. More...

unsigned	get_number_of_particles (Mediator_label mediator) const
	Access to the sum of number of vertices of the connected components with a label having mediator as ancestor. More...

bool	is_at_interface (Particle_vertex_handle p) const

bool	is_empty (void) const
	Check that there is no connected component in this interface. More...

Particles_iterator	particles_begin (void) const
	Starts the set of interface vertices in this interface. More...

Particles_iterator	particles_end (void) const
	Terminates the set of interface vertices in this interface. More...

Particles_of_label_iterator	particles_begin (Partner_label partner) const
	Starts the set of interface vertices with label having the input label as ancestor. More...

Particles_of_label_iterator	particles_begin (Mediator_label mediator) const
	Starts the set of interface vertices with label having the input label as ancestor. More...

Particles_of_label_iterator	particles_end (Partner_label partner) const
	Terminates the set of interface vertices with label having the input label as ancestor. More...

Particles_of_label_iterator	particles_end (Mediator_label mediator) const
	Terminates the set of interface vertices with label having the input label as ancestor. More...

Contacts
unsigned	get_number_of_contacts (void) const
	Access to the sum of number of edges of the connected components. More...

unsigned	get_number_of_contacts (Partner_label partner_1, Partner_label partner_2) const
	Access to the sum of number of edges of the connected components with labels having the input labels as ancestor. More...

unsigned	get_number_of_contacts (Partner_label partner, Mediator_label mediator) const
	Access to the sum of number of edges of the connected components with labels having the input labels as ancestor. More...

bool	is_at_frontier (Contact c) const

Contacts_iterator	contacts_begin (void) const
	Starts the set of alpha-complex edges in this interface. More...

Contacts_iterator	contacts_end (void) const
	Terminates the set of alpha-complex edges in this interface. More...

Contacts_of_label_iterator	contacts_begin (Partner_label partner_1, Partner_label partner_2) const
	Starts the set of alpha-complex edges with labels having the input labels as ancestors. More...

Contacts_of_label_iterator	contacts_begin (Partner_label partner, Mediator_label mediator) const
	Starts the set of alpha-complex edges with labels having the input labels as ancestors. More...

Contacts_of_label_iterator	contacts_end (Partner_label partner_1, Partner_label partner_2) const
	Terminates the set of alpha-complex edges with labels having the input labels as ancestors. More...

Contacts_of_label_iterator	contacts_end (Partner_label partner, Mediator_label mediator) const
	Terminates the set of alpha-complex edges with labels having the input labels as ancestors. More...

Contacts order 3
unsigned	get_size_of_frontier (void) const
	Access to the sum of number of bording facets of the connected components. More...

unsigned	get_number_of_contacts_order_3 (void) const

unsigned	get_number_of_contact_adjacencies (void) const

Not_frontier_iterator	not_frontier_begin (void) const
	Starts the set of bording facets in this interface. More...

Not_frontier_iterator	not_frontier_end (void) const
	Terminates the set of bording facets in this interface. More...

Frontier_iterator	frontier_begin (void) const
	Starts the set of bording facets in this interface. More...

Frontier_iterator	frontier_end (void) const
	Terminates the set of bording facets in this interface. More...

Detailed Description

template<class MolecularInterfaceConnectedComponent>
class SBL::CSB::T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >

Container for Molecular interface connected components that share the same interface.

It is designed as a stl vector of T_Molecular_interface_connected_component_data_structure.

Template Parameters

MolecularInterfaceConnectedComponent Model of a connected component of a molecular interface.

Member Typedef Documentation

◆ Connected_component

typedef MolecularInterfaceConnectedComponent Connected_component

Alias for the template parameter.

◆ Connected_components_iterator

typedef Base::const_iterator Connected_components_iterator

Iterator over the list of connected components.

◆ Contact_order_3_iterator

typedef CADS::T_Container_of_containers_const_iterator<Frontier_cc_iterator> Contact_order_3_iterator

Iterator over the border facets in all connected components.

◆ Contacts_iterator

typedef CADS::T_Container_of_containers_const_iterator<Connected_components_iterator> Contacts_iterator

Iterator over the interface edges in all connected components.

◆ Contacts_of_label_iterator

typedef boost::filter_iterator<Have_labels, Contacts_iterator> Contacts_of_label_iterator

Iterator over the edges in all connected components with labels having as ancestors the given labels.

◆ Frontier_cc_iterator

typedef boost::transform_iterator<Get_frontier, Connected_components_iterator> Frontier_cc_iterator

Iterator over the interface facets bording all connected components.

◆ Mediator_label

typedef MolecularInterfaceConnectedComponent::Mediator_label Mediator_label

System's label associated to a mediator.

◆ Mediator_labels_traits

typedef MolecularInterfaceConnectedComponent::Mediator_labels_traits Mediator_labels_traits

Traits class providing the labels for the mediators.

◆ Particles_of_label_iterator

typedef boost::filter_iterator<Have_labels, Particles_iterator> Particles_of_label_iterator

Iterator over the vertices in all connected components with a label having as ancestor a given label.

◆ Partner_label

typedef MolecularInterfaceConnectedComponent::Partner_label Partner_label

System's label associated to a partner.

◆ Partner_labels_traits

typedef MolecularInterfaceConnectedComponent::Partner_labels_traits Partner_labels_traits

Traits class providing the labels for the partners.

Constructor & Destructor Documentation

◆ T_Molecular_interface_data_structure_base() [1/2]

T_Molecular_interface_data_structure_base ( void )

inline

Default constructor. Do not initialize anything.

◆ T_Molecular_interface_data_structure_base() [2/2]

T_Molecular_interface_data_structure_base	(	InputIterator	begin,
		InputIterator	end,
		MolecularStructureClassifier &	classifier
	)

inline

Constructor used for bicolor and mediated interface.

It initializes the alpha-complex, store all interface edges in between [begin, end) and construct the set of interface vertices. Note that the set of bording facets cannot be constructed since there may be an ambiguity on the labels depending they are hierarchical or primitives. This constructor is used when the user does not want to precise if the interface is bicolor or mediated.

Member Function Documentation

◆ connected_components_begin()

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Connected_components_iterator connected_components_begin ( void ) const

inline

Starts the set of connected components of this interface.

◆ connected_components_end()

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Connected_components_iterator connected_components_end ( void ) const

inline

Terminates the set of connected components of this interface.

◆ contacts_begin() [1/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Contacts_of_label_iterator contacts_begin	(	Partner_label	partner,
		Mediator_label	mediator
	)		const

inline

Starts the set of alpha-complex edges with labels having the input labels as ancestors.

◆ contacts_begin() [2/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Contacts_of_label_iterator contacts_begin	(	Partner_label	partner_1,
		Partner_label	partner_2
	)		const

inline

Starts the set of alpha-complex edges with labels having the input labels as ancestors.

◆ contacts_begin() [3/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Contacts_iterator contacts_begin ( void ) const

inline

Starts the set of alpha-complex edges in this interface.

◆ contacts_end() [1/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Contacts_of_label_iterator contacts_end	(	Partner_label	partner,
		Mediator_label	mediator
	)		const

inline

Terminates the set of alpha-complex edges with labels having the input labels as ancestors.

◆ contacts_end() [2/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Contacts_of_label_iterator contacts_end	(	Partner_label	partner_1,
		Partner_label	partner_2
	)		const

inline

Terminates the set of alpha-complex edges with labels having the input labels as ancestors.

◆ contacts_end() [3/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Contacts_iterator contacts_end ( void ) const

inline

Terminates the set of alpha-complex edges in this interface.

◆ frontier_begin()

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Frontier_iterator frontier_begin ( void ) const

inline

Starts the set of bording facets in this interface.

◆ frontier_end()

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Frontier_iterator frontier_end ( void ) const

inline

Terminates the set of bording facets in this interface.

◆ get_number_of_connected_components()

unsigned get_number_of_connected_components ( void ) const

inline

Access to the number of connected components.

◆ get_number_of_contacts() [1/3]

unsigned get_number_of_contacts	(	Partner_label	partner,
		Mediator_label	mediator
	)		const

inline

Access to the sum of number of edges of the connected components with labels having the input labels as ancestor.

See CSB::T_Molecular_interface_connected_component_data_structure::get_number_of_contacts .

◆ get_number_of_contacts() [2/3]

unsigned get_number_of_contacts	(	Partner_label	partner_1,
		Partner_label	partner_2
	)		const

inline

Access to the sum of number of edges of the connected components with labels having the input labels as ancestor.

See CSB::T_Molecular_interface_connected_component_data_structure::get_number_of_contacts .

◆ get_number_of_contacts() [3/3]

unsigned get_number_of_contacts ( void ) const

inline

Access to the sum of number of edges of the connected components.

See CSB::T_Molecular_interface_connected_component_data_structure::get_number_of_contacts .

◆ get_number_of_particles() [1/3]

unsigned get_number_of_particles ( Mediator_label mediator ) const

inline

Access to the sum of number of vertices of the connected components with a label having mediator as ancestor.

See CSB::T_Molecular_interface_connected_component_data_structure::get_number_of_particles .

◆ get_number_of_particles() [2/3]

unsigned get_number_of_particles ( Partner_label partner ) const

inline

Access to the sum of number of vertices of the connected components with a label having partner as ancestor.

See CSB::T_Molecular_interface_connected_component_data_structure::get_number_of_particles .

◆ get_number_of_particles() [3/3]

unsigned get_number_of_particles ( void ) const

inline

Access to the sum of number of vertices of the connected components.

See CSB::T_Molecular_interface_connected_component_data_structure::get_number_of_particles .

◆ get_size_of_frontier()

unsigned get_size_of_frontier ( void ) const

inline

Access to the sum of number of bording facets of the connected components.

See CSB::T_Molecular_interface_connected_component_data_structure::get_number_of_facets .

◆ is_empty()

bool is_empty ( void ) const

inline

Check that there is no connected component in this interface.

◆ not_frontier_begin()

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Not_frontier_iterator not_frontier_begin ( void ) const

inline

Starts the set of bording facets in this interface.

◆ not_frontier_end()

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Not_frontier_iterator not_frontier_end ( void ) const

inline

Terminates the set of bording facets in this interface.

◆ particles_begin() [1/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Particles_of_label_iterator particles_begin ( Mediator_label mediator ) const

inline

Starts the set of interface vertices with label having the input label as ancestor.

◆ particles_begin() [2/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Particles_of_label_iterator particles_begin ( Partner_label partner ) const

inline

Starts the set of interface vertices with label having the input label as ancestor.

◆ particles_begin() [3/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Particles_iterator particles_begin ( void ) const

inline

Starts the set of interface vertices in this interface.

◆ particles_end() [1/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Particles_of_label_iterator particles_end ( Mediator_label mediator ) const

inline

Terminates the set of interface vertices with label having the input label as ancestor.

◆ particles_end() [2/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Particles_of_label_iterator particles_end ( Partner_label partner ) const

inline

Terminates the set of interface vertices with label having the input label as ancestor.

◆ particles_end() [3/3]

T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >::Particles_iterator particles_end ( void ) const

inline

Terminates the set of interface vertices in this interface.

Public Types

Labels Types

Iterator types

Constructors

Connected Components

Particles

Contacts

Contacts order 3

Detailed Description

template<class MolecularInterfaceConnectedComponent> class SBL::CSB::T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >

Member Typedef Documentation

◆ Connected_component

◆ Connected_components_iterator

◆ Contact_order_3_iterator

◆ Contacts_iterator

◆ Contacts_of_label_iterator

◆ Frontier_cc_iterator

◆ Mediator_label

◆ Mediator_labels_traits

◆ Particles_of_label_iterator

◆ Partner_label

◆ Partner_labels_traits

Constructor & Destructor Documentation

◆ T_Molecular_interface_data_structure_base() [1/2]

◆ T_Molecular_interface_data_structure_base() [2/2]

Member Function Documentation

◆ connected_components_begin()

◆ connected_components_end()

◆ contacts_begin() [1/3]

◆ contacts_begin() [2/3]

◆ contacts_begin() [3/3]

◆ contacts_end() [1/3]

◆ contacts_end() [2/3]

◆ contacts_end() [3/3]

◆ frontier_begin()

◆ frontier_end()

◆ get_number_of_connected_components()

◆ get_number_of_contacts() [1/3]

◆ get_number_of_contacts() [2/3]

◆ get_number_of_contacts() [3/3]

◆ get_number_of_particles() [1/3]

◆ get_number_of_particles() [2/3]

◆ get_number_of_particles() [3/3]

◆ get_size_of_frontier()

◆ is_empty()

◆ not_frontier_begin()

◆ not_frontier_end()

◆ particles_begin() [1/3]

◆ particles_begin() [2/3]

◆ particles_begin() [3/3]

◆ particles_end() [1/3]

◆ particles_end() [2/3]

◆ particles_end() [3/3]

template<class MolecularInterfaceConnectedComponent>
class SBL::CSB::T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >