T_Alpha_complex_of_molecular_model< ParticleTraits, TAlphaComplexVertexBase, TAlphaComplexCellBase, TAlphaComplexBase > Class Template Reference

Derived class from CGAL alpha-complex for filling it with particles. More...

#include <Alpha_complex_of_molecular_model.hpp>

Public Types
typedef T_Alpha_complex_of_molecular_model< ParticleTraits, TAlphaComplexVertexBase, TAlphaComplexCellBase, TAlphaComplexBase >	Self
typedef T_Alpha_complex_of_molecular_model_traits< ParticleTraits, TAlphaComplexVertexBase, TAlphaComplexCellBase >	Alpha_complex_of_molecular_model_traits
typedef T_Triangulation_of_molecular_model< ParticleTraits, TAlphaComplexVertexBase, TAlphaComplexCellBase >	Triangulation_of_molecular_model
typedef TAlphaComplexBase< Triangulation_of_molecular_model, CGAL::Tag_false >	Base
typedef Alpha_complex_of_molecular_model_traits::FT	FT
typedef Alpha_complex_of_molecular_model_traits::Get_geometric_representation	Get_geometric_representation
typedef Base::Vertex	Particle_vertex
typedef Base::Vertex_handle	Particle_vertex_handle

Constructors
	T_Alpha_complex_of_molecular_model (const FT &alpha=0.)
	T_Alpha_complex_of_molecular_model (Triangulation_of_molecular_model &T, const FT &alpha=0.)

Modifiers
Particle_vertex_handle	insert (const typename Base::Point &p)
Particle_vertex_handle	insert (typename ParticleTraits::Particle_type &p)

Detailed Description

template<class ParticleTraits, template< class Traits, class Vb, class ExactAlphaComparisonTag, class WeightedTag > class TAlphaComplexVertexBase = T_Alpha_complex_vertex_base_3, template< class Traits, class Cb, class ExactAlphaComparisonTag, class WeightedTag > class TAlphaComplexCellBase = T_Alpha_complex_cell_base_3, template< class Dt, class AlphaExactComparisonTag > class TAlphaComplexBase = T_Alpha_complex_base_3>
class SBL::CSB::T_Alpha_complex_of_molecular_model< ParticleTraits, TAlphaComplexVertexBase, TAlphaComplexCellBase, TAlphaComplexBase >

Derived class from CGAL alpha-complex for filling it with particles.

It uses ParticleTraits for determining the geometrical kernel used for the representation and computation of the -complex, and for attaching atom data to their corresponding vertex.

Template Parameters

ParticleTraits	Traits class defining geometric properties of a particle.
TAlphaComplexVertexBase	Base class for representing a vertex in the 3D -complex. It has SBL::CSB::T_Alpha_complex_vertex_base_3 as default type.
TAlphaComplexCellBase	Base class for representing a cell in the 3D -complex. It has SBL::CSB::T_Alpha_complex_cell_base_3 as default type.
TAlphaComplexBase	Base template representation of the -complex it-self without biological context. It allows to switch easily between the class CGAL::Fixed_alpha_shape_3 and the class CGAL::Alpha_shape_3. It has SBL::CSB::T_Alpha_complex_base_3 as default type, that is a wrapper for using both CGAL data structures.

Member Typedef Documentation

Alpha_complex_of_molecular_model_traits

typedef T_Alpha_complex_of_molecular_model_traits<ParticleTraits, TAlphaComplexVertexBase, TAlphaComplexCellBase> Alpha_complex_of_molecular_model_traits

Base

typedef TAlphaComplexBase<Triangulation_of_molecular_model, CGAL::Tag_false> Base

FT

typedef Alpha_complex_of_molecular_model_traits::FT FT

Get_geometric_representation

typedef Alpha_complex_of_molecular_model_traits:: Get_geometric_representation Get_geometric_representation

Particle_vertex

typedef Base::Vertex Particle_vertex

Particle_vertex_handle

typedef Base::Vertex_handle Particle_vertex_handle

Self

typedef T_Alpha_complex_of_molecular_model<ParticleTraits, TAlphaComplexVertexBase, TAlphaComplexCellBase, TAlphaComplexBase> Self

Triangulation_of_molecular_model

typedef T_Triangulation_of_molecular_model<ParticleTraits, TAlphaComplexVertexBase, TAlphaComplexCellBase> Triangulation_of_molecular_model

Constructor & Destructor Documentation

T_Alpha_complex_of_molecular_model() [1/2]

T_Alpha_complex_of_molecular_model ( const FT &  alpha = 0. )

inline

T_Alpha_complex_of_molecular_model() [2/2]

T_Alpha_complex_of_molecular_model ( Triangulation_of_molecular_model &  T, const FT &  alpha = 0.  )

inline

Member Function Documentation

insert() [1/2]

T_Alpha_complex_of_molecular_model< ParticleTraits, TAlphaComplexVertexBase, TAlphaComplexCellBase, TAlphaComplexBase >::Particle_vertex_handle insert ( const typename Base::Point &  p )

inline

insert() [2/2]

T_Alpha_complex_of_molecular_model< ParticleTraits, TAlphaComplexVertexBase, TAlphaComplexCellBase, TAlphaComplexBase >::Particle_vertex_handle insert ( typename ParticleTraits::Particle_type &  p )

inline