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Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
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Built-in Methods | |
| __init__ (self, executable_path="") | |
| Initialize a run specification with possibly the executable path. | |
| __len__ (self) | |
| Return the number of options in the specification. | |
Executable Path | |
| get_run_options (self) | |
| Return the list of nvp options corresponding to this run. | |
| get_executable_path (self) | |
| Get the executable path. | |
| set_executable_path (self, executable_path) | |
| Set the executable file path. | |
Options Management | |
| add_option (self, name, value="") | |
| Add the option name for an input option with a given value. | |
| add_file_option (self, name, value="") | |
| Add the option name for an input file option with the path to a file. | |
| build_run_command (self) | |
| Create the command line corresponding to the specified run. | |
| run (self) | |
| Starts the specified run. | |
A list of name-value-pairs to specify one run. A list of name-value-pairs to specify one run.
| __init__ | ( | self, | |
| executable_path = "" ) |
Initialize a run specification with possibly the executable path.
| __len__ | ( | self | ) |
Return the number of options in the specification.
| add_file_option | ( | self, | |
| name, | |||
| value = "" ) |
Add the option name for an input file option with the path to a file.
The path is converted to an absolute path when stored. Note that the object itself is returned such that it is possible to add multiple options in one instruction.
| add_option | ( | self, | |
| name, | |||
| value = "" ) |
Add the option name for an input option with a given value.
If no value is given, it is an implicit value (for example, a boolean). Note that the object itself is returned such that it is possible to add multiple options in one instruction.
| build_run_command | ( | self | ) |
Create the command line corresponding to the specified run.
| get_executable_path | ( | self | ) |
Get the executable path.
| get_run_options | ( | self | ) |
Return the list of nvp options corresponding to this run.
| run | ( | self | ) |
Starts the specified run.
| set_executable_path | ( | self, | |
| executable_path ) |
Set the executable file path.