Here is a list of all documented functions with links to the class documentation for each member:

- p -

• parameters() : parameters
• parents_begin() : T_Directed_acyclic_graph< VertexProperty, EdgeProperty >, T_Directed_acyclic_graph_with_layers< VertexProperty, EdgeProperty >
• parents_end() : T_Directed_acyclic_graph< VertexProperty, EdgeProperty >, T_Directed_acyclic_graph_with_layers< VertexProperty, EdgeProperty >
• parse_command_line() : T_Module_based_workflow< Dummy >
• parse_gui() : ParseGUI
• parse_update_flags_file() : GUIUpdatePanelJsonGenerator
• parse_widget() : ParseGUI
• parse_widgets() : UiToJsonConverter
• particles_begin() : T_Molecular_covalent_structure< Particle_info_ >, T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >, T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >
• particles_end() : T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >, T_Molecular_interface_data_structure_base< MolecularInterfaceConnectedComponent >
• pearson() : PALSE_statistic_handle
• phi_angles_begin() : T_Polypeptide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType >
• phi_angles_end() : T_Polypeptide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType >
• plot() : Genetrank_gene_radar
• plot2d() : PALSE_statistic_handle
• plot_and_dump_contact_stats() : MCI_analysis
• plot_contacts_counts() : MCI_analysis
• plot_degree_distribution() : Genetrank_network_statistical_analysis
• prepare_ngl_visualization() : KpaxPostAnalyzer
• prepare_pymol_visualization() : KpaxPostAnalyzer
• prepare_viewer_files() : KpaxPostAnalyzer
• prepare_vmd_visualization() : KpaxPostAnalyzer
• pretty_print() : MCI_set_of_contacts
• pretty_print_one_sol() : MCI_set_of_contacts
• pretty_print_solutions() : MCI_solutions
• primitive_labels_begin() : T_Hierarchical_labels_forest< MolecularSystemLabelsTraits >
• primitive_labels_end() : T_Hierarchical_labels_forest< MolecularSystemLabelsTraits >
• print() : T_Molecular_covalent_structure< Particle_info_ >, T_Tertiary_quaternary_structure_annotator< ParticleTraits, MolecularSystemLabelTraits >
• print_alignment_dot() : T_Alignment_engine< SequenceOrStructure, AlignerAlgorithm, FT >
• print_alignment_txt() : T_Alignment_engine< SequenceOrStructure, AlignerAlgorithm, FT >
• print_analysis_summary() : KpaxAlignmentGraph
• print_batch() : BM_Batch
• print_in_dot_format() : T_Directed_acyclic_graph< VertexProperty, EdgeProperty >, T_Directed_acyclic_graph_with_layers< VertexProperty, EdgeProperty >
• print_stats() : branch_and_bound< problem >
• print_transform_matrix() : T_Point_cloud_rigid_registration_3< FT >
• print_two_lists() : PALSE_DS_manipulator
• printallbuffers() : T_AD_buffer< Dummy >
• problem() : problem< graph, dp_mat, lambda_mat, parameter >
• process() : MISA
• process_id() : Residue_mapping
• prohibit() : lambda_matrix< graph >
• psi_angles_begin() : T_Polypeptide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType >
• psi_angles_end() : T_Polypeptide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType >
• T_Particle_vertex_base() : T_Particle_vertex_base< ParticleTraits, GT, Vb >
• T_Point_cloud_rigid_registration_3() : T_Point_cloud_rigid_registration_3< FT >
• T_Points_d_file_loader() : T_Points_d_file_loader< PointD >
• T_Points_d_file_loader_generic() : T_Points_d_file_loader_generic< PointD, PointD_filler >
• T_Polynucleotide_chain_representation() : T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType >
• T_Polypeptide_chain_representation() : T_Polypeptide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType >
• T_Protein_representation() : T_Protein_representation< PolypeptideChain >
• T_PyMOL_viewer() : T_PyMOL_viewer< Dummy >