Genetrank_network_statistical_analysis Class Reference

Constructions
def	__init__ (self, ppi_graph_file_name)
	Default constructor. More...

Statistics
def	get_reachability_matrix (self)
	Generates the reachability matrix for the PPIN. More...
def	get_node_degrees (self)
	Gets a list with the node degrees. More...

Visualizations
def	plot_degree_distribution (self, show=False, figure_format='pdf', logscale=False)
	Plots a histogram of the degrees of the nodes on the network. More...

Other
def	summary (self)
	Prints a summary of the network: number of nodes, of edges (and arcs), and number of self-interactions. More...

Detailed Description

A class performing statistical analysis on a PPIN A class performing statistical analysis on a PPIN.

Constructor & Destructor Documentation

__init__()

def __init__	(		self,
			ppi_graph_file_name
	)

Default constructor.

Member Function Documentation

get_node_degrees()

def get_node_degrees

(

self

)

Gets a list with the node degrees.

get_reachability_matrix()

def get_reachability_matrix

(

self

)

Generates the reachability matrix for the PPIN.

plot_degree_distribution()

def plot_degree_distribution	(		self,
			show = False,
			figure_format = 'pdf',
			logscale = False
	)

Plots a histogram of the degrees of the nodes on the network.

summary()

def summary

(

self

)

Prints a summary of the network: number of nodes, of edges (and arcs), and number of self-interactions.