T_Multiple_sequence_alignment_DS< SeqName, UnitRep, Score > Class Template Reference

#include <Multiple_sequence_alignment_DS.hpp>

Detailed Description

template<class SeqName, class UnitRep, class Score>
class SBL::CSB::T_Multiple_sequence_alignment_DS< SeqName, UnitRep, Score >

\sbl_add_package_main_class{Alignment_engines,T_Multiple_sequence_alignment_DS, Data structure to handle MSA.

Data structure to handle MSA and manipulate all types of indices ie alignment indices, chain/sequence indices, and valid sequence indices.

Template Parameters

SeqName	the sequence name eg a string
UnitRep	the type used to represent a unit eg a character
Score	the number type used to represent a score }