T_Kpax< StructureType > Class Template Reference

#include <Iterative_aligner_instantiations.hpp>

Public Types
typedef StructureType	Structure_type
typedef T_Kpax< Structure_type >	Self
typedef Structure_type::value_type	Canonized_residue
typedef T_Score_computer_K< Canonized_residue >	Score_computer_K
typedef T_Seeder_DP_score< Structure_type, Score_computer_K >	Seeder_kpax
typedef T_Iterative_aligner< Structure_type, Seeder_kpax, G_Score_computer >	Base
typedef G_Score_computer	Score_computer
typedef T_Seeder_DP_score< StructureType, T_Score_computer_K< StructureType::value_type > >	Seeder
typedef CGAL::Cartesian< double >::Point_3	Point_3
typedef CGAL::Cartesian< double >::Point_2	Point_2
typedef std::pair< int, int >	Aligned_pair
typedef std::vector< Aligned_pair >	Alignment_type
typedef double	Score_type
typedef std::pair< Score_type, Alignment_type >	DP_matrix_item
typedef std::vector< DP_matrix_item >	DP_matrix
typedef std::vector< Point_3 >	Point_cloud
typedef SBL::GT::T_Point_cloud_rigid_registration_3	Point_cloud_rigid_registration_3
typedef Seeder::Seed_type	Seed_type

Public Member Functions
	T_Kpax ()
Score_type	operator() (const Structure_type &struct_1, const Structure_type &struct_2, OutputIterator out, unsigned verbose=0, std::ostream &log=std::cout)
Seeder &	get_seeder ()
double	get_seeder_score (void) const

Static Public Member Functions
static void	add_options (boost::program_options::options_description &options)

Member Typedef Documentation

Aligned_pair

typedef std::pair<int, int> Aligned_pair

inherited

Alignment_type

typedef std::vector<Aligned_pair> Alignment_type

inherited

Base

typedef T_Iterative_aligner<Structure_type, Seeder_kpax, G_Score_computer> Base

Canonized_residue

typedef Structure_type::value_type Canonized_residue

DP_matrix

typedef std::vector<DP_matrix_item> DP_matrix

inherited

DP_matrix_item

typedef std::pair<Score_type, Alignment_type> DP_matrix_item

inherited

Point_2

typedef CGAL::Cartesian<double>::Point_2 Point_2

inherited

Point_3

typedef CGAL::Cartesian<double>::Point_3 Point_3

inherited

Point_cloud

typedef std::vector<Point_3> Point_cloud

inherited

Point_cloud_rigid_registration_3

typedef SBL::GT::T_Point_cloud_rigid_registration_3 Point_cloud_rigid_registration_3

inherited

Score_computer

typedef G_Score_computer Score_computer

inherited

Score_computer_K

typedef T_Score_computer_K<Canonized_residue> Score_computer_K

Score_type

typedef double Score_type

inherited

Seed_type

typedef Seeder::Seed_type Seed_type

inherited

Seeder

typedef T_Seeder_DP_score< StructureType, T_Score_computer_K< StructureType::value_type > > Seeder

inherited

Seeder_kpax

typedef T_Seeder_DP_score<Structure_type, Score_computer_K> Seeder_kpax

Self

typedef T_Kpax<Structure_type> Self

Structure_type

typedef StructureType Structure_type

Constructor & Destructor Documentation

T_Kpax()

T_Kpax ( )

inline

Member Function Documentation

add_options()

void add_options ( boost::program_options::options_description &  options )

inlinestaticinherited

get_seeder()

Seeder& get_seeder ( )

inlineinherited

get_seeder_score()

double get_seeder_score ( void  ) const

inlineinherited

operator()()

T_Iterative_aligner< StructureType, Seeder, G_Score_computer >::Score_type operator() ( const Structure_type &  struct_1, const Structure_type &  struct_2, OutputIterator  out, unsigned  verbose = 0, std::ostream &  log = std::cout  )

inherited