Functor for the substitution matrix. Is imposed the following properties: (i) symmetry, (ii) undefined values are 0. Thus, it is just enough to specify non null values on only one triangle of the matrix. More...

#include <Alignment_engine.hpp>

Public Member Functions
	Matrix_function (Substitution_matrix &matrix)

FT	operator() (const Alignment_unit_name &p, const Alignment_unit_name &q) const

Public Attributes
Substitution_matrix *	m_matrix

Detailed Description

template<class SequenceOrStructure, class AlignerAlgorithm, class FT = double>
class SBL::CSB::T_Alignment_engine< SequenceOrStructure, AlignerAlgorithm, FT >::Matrix_function

Functor for the substitution matrix. Is imposed the following properties: (i) symmetry, (ii) undefined values are 0. Thus, it is just enough to specify non null values on only one triangle of the matrix.

Constructor & Destructor Documentation

◆ Matrix_function()

Matrix_function ( Substitution_matrix & matrix )

inline

Member Function Documentation

◆ operator()()

FT operator()	(	const Alignment_unit_name &	p,
		const Alignment_unit_name &	q
	)		const

inline

Member Data Documentation

◆ m_matrix

Substitution_matrix* m_matrix

Public Member Functions

Public Attributes