Functor for the substitution matrix. Is imposed the following properties: (i) symmetry, (ii) undefined values are 0. Thus, it is just enough to specify non null values on only one triangle of the matrix.
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template<class SequenceOrStructure, class AlignerAlgorithm, class FT = double>
class SBL::CSB::T_Alignment_engine< SequenceOrStructure, AlignerAlgorithm, FT >::Matrix_function
Functor for the substitution matrix. Is imposed the following properties: (i) symmetry, (ii) undefined values are 0. Thus, it is just enough to specify non null values on only one triangle of the matrix.