dp_mat_apurva< graph, lambda_matrix > Class Template Reference

#include <dynamic_programming.h>

Public Member Functions
	dp_mat_apurva (graph &pg)
	~dp_mat_apurva ()
void	fill (lambda_matrix &lb_mat, vector< int > &lo, vector< int > &up)
float	solve (vector< int > &sol, vector< int > &lo, vector< int > &up)
int	get_arc_out (int col1, int row1, int ind)
float	value_arcs_out (int nb_next_col, int nb_next_row, vector< int > &next_col, vector< int > &next_row, vector< float > &coef_lambda_edge)
void	calc_arcs_out (int col1, int row1, lambda_matrix &lb_mat, vector< int > &lo, vector< int > &up)

Protected Attributes
vector< vector< vector< int > > >	dp_arc_out_col
vector< vector< float > >	dp_arc
vector< vector< int > >	arc_from
vector< vector< float > >	dp
vector< vector< float > >	dp_score
vector< vector< int > >	dp_from

Detailed Description

template<class graph, class lambda_matrix>
class dp_mat_apurva< graph, lambda_matrix >

DP_Mat_Apurva. Dynamic Programming used by the A_purva model for Contact Map Overlap Maximization Problem (CMO).

Constructor & Destructor Documentation

dp_mat_apurva()

dp_mat_apurva ( graph &  pg )

inline

Constructors

~dp_mat_apurva()

~dp_mat_apurva ( )

inline

Destructor

Member Function Documentation

calc_arcs_out()

void calc_arcs_out ( int  col1, int  row1, lambda_matrix &  lb_mat, vector< int > &  lo, vector< int > &  up  )

inline

For a given node, find the best value of the best outgoing edges set, and fill dp_arc_out_col

fill()

void fill ( lambda_matrix &  lb_mat, vector< int > &  lo, vector< int > &  up  )

inline

Methods Fill the dp_score table, ie compute for each node, the value of outgoing edges set.

get_arc_out()

int get_arc_out ( int  col1, int  row1, int  ind  )

inline

For a given node N_{col1,row1} and a given next column (define by a next_col indice ind), return the chosen row2, corresponding to the activated edge E_{col1,row1,col2,row2}.

solve()

float solve ( vector< int > &  sol, vector< int > &  lo, vector< int > &  up  )

inline

Find the node set having the best outgoing edges values

value_arcs_out()

float value_arcs_out ( int  nb_next_col, int  nb_next_row, vector< int > &  next_col, vector< int > &  next_row, vector< float > &  coef_lambda_edge  )

inline

For a given node, find the best value of the best outgoing edges set.

Member Data Documentation

arc_from

vector<vector<int> > arc_from

protected

2D table used to compute by dynamic programming the best set of outgoing edges. Contains moves made to obtain values in dp_arc.

dp

vector<vector<float> > dp

protected

2D table used to compute by dynamic programming the best set of nodes. Contains values of path made in DP_score.

dp_arc

vector<vector<float> > dp_arc

protected

2D table used to compute by dynamic programming the best set of outgoing edges. Contains values of outgoing edges sets

dp_arc_out_col

vector<vector<vector<int > > > dp_arc_out_col

protected

For each node N_{col_row} and each next column, indicates chosen next row ie, gives all activated outgoing edge.

dp_from

vector<vector<int> > dp_from

protected

2D table used to compute by dynamic programming the best set of nodes. Contain moves made to obtain values in dp_score.

dp_score

vector<vector<float> > dp_score

protected

2D table used to compute by dynamic programming the best set of nodes. Contains score of each node, based on there coeficient and best outgoing edge value.