Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
Cradle_step2 Class Reference

Public Member Functions

def __init__ (self, cradle_step1_options)
 
def get_spect_files (self)
 
def load_pdb_files (self, path)
 
def get_pdb_info (self)
 
def run (self)
 

Public Attributes

 m_options
 
 spec_per_protein
 
 domains
 
 re_domains
 
 re_pdb_info
 
 specfiles
 
 files
 
 info_pdb
 

Detailed Description

Get subdomain average Mean displacement, compute distances (lRMSD or RMSDcomb) for given pdb files with different spec files, and perform a hierarchical clustering. Get subdomain average Mean displacement, compute distances (lRMSD or RMSDcomb) for given pdb files with different spec files, and perform a hierarchical clustering.

Constructor & Destructor Documentation

◆ __init__()

def __init__ (   self,
  cradle_step1_options 
)

Member Function Documentation

◆ get_pdb_info()

def get_pdb_info (   self)

◆ get_spect_files()

def get_spect_files (   self)

◆ load_pdb_files()

def load_pdb_files (   self,
  path 
)

◆ run()

def run (   self)

Member Data Documentation

◆ domains

domains

◆ files

files

◆ info_pdb

info_pdb

◆ m_options

m_options

◆ re_domains

re_domains

◆ re_pdb_info

re_pdb_info

◆ spec_per_protein

spec_per_protein

◆ specfiles

specfiles