Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
T_Pseudo_atom_per_residue_spec_with_flat_info_and_annotations_traits< Annotations, GeometricKernel, SystemItems > Class Template Reference

Traits class defining pseudo-atoms traits (biophysical and geometric properties). Traits class defining pseudo-atoms traits (biophysical and geometric properties). More...

#include <Pseudo_atom_per_residue_spec_with_flat_info_and_annotations_traits.hpp>

Classes

class  Get_geometric_representation
 Functor returning a weighted point representing the coarse atom. More...
 

Public Types

typedef T_Pseudo_atom_per_residue_spec_with_flat_info_and_annotations_traits< Annotations, GeometricKernel, SystemItems > Self
 
typedef T_Particle_with_annotations_traits< T_Pseudo_atom_per_residue_spec_with_flat_info_traits< GeometricKernel, SystemItems >, T_Name_and_radius_annotations< typename GeometricKernel::FT, Annotations > > Base
 
typedef SBL::Models::T_Name_annotator_for_pseudo_atoms Name_annotator
 
typedef SBL::Models::T_Radius_annotator_for_particles_with_annotated_name< typename Base::FT > Radius_annotator
 
typedef SBL::Models::T_Dynamic_annotator_for_residues Dynamic_annotator
 
typedef SBL::Models::T_Particle_annotator_collector< Name_annotator, Radius_annotatorName_and_radius_annotator
 
typedef SBL::Models::T_Particle_annotator_collector< Name_and_radius_annotator, Dynamic_annotatorAnnotator_default
 
typedef T_Particle_with_annotations< typename Base::Particle_type, T_Name_and_radius_annotations< GeometricKernel::FT, SBL::Models::T_Dynamic_annotator_for_residues<>::template T_Annotations_with_dynamic< void > > > Particle_type
 
typedef GeometricKernel Geometric_kernel
 Geometric primitives for representing coarse atoms with exact coordinates, from the CGAL library. More...
 
typedef Geometric_kernel::FT FT
 
typedef ESBTL::Molecular_system< SystemItems, typename Geometric_kernel::Point_3 > Molecular_system
 Representation of a molecular system using the ESBTL library. More...
 
typedef Molecular_system::Atom Atom_base
 Representation of an atom of a molecular system. More...
 
typedef ESBTL::Coarse_atom< Atom_base, typename Geometric_kernel::Point_3 > Atom
 Rerpesentation of a coarse atom of a molecular system. More...
 

Detailed Description

template<class Annotations = void, class GeometricKernel = CGAL::Exact_predicates_inexact_constructions_kernel, class SystemItems = ESBTL::System_items_with_coarse_grain>
class SBL::Models::T_Pseudo_atom_per_residue_spec_with_flat_info_and_annotations_traits< Annotations, GeometricKernel, SystemItems >

Traits class defining pseudo-atoms traits (biophysical and geometric properties). Traits class defining pseudo-atoms traits (biophysical and geometric properties).

Member Typedef Documentation

◆ Annotator_default

◆ Atom

typedef ESBTL::Coarse_atom<Atom_base, typename Geometric_kernel::Point_3> Atom
inherited

Rerpesentation of a coarse atom of a molecular system.

◆ Atom_base

typedef Molecular_system::Atom Atom_base
inherited

Representation of an atom of a molecular system.

◆ Base

typedef T_Particle_with_annotations_traits<T_Pseudo_atom_per_residue_spec_with_flat_info_traits<GeometricKernel, SystemItems>, T_Name_and_radius_annotations<typename GeometricKernel::FT, Annotations> > Base

◆ Dynamic_annotator

◆ FT

typedef Geometric_kernel::FT FT
inherited

◆ Geometric_kernel

typedef GeometricKernel Geometric_kernel
inherited

Geometric primitives for representing coarse atoms with exact coordinates, from the CGAL library.

◆ Molecular_system

typedef ESBTL::Molecular_system<SystemItems, typename Geometric_kernel::Point_3> Molecular_system
inherited

Representation of a molecular system using the ESBTL library.

◆ Name_and_radius_annotator

◆ Name_annotator

◆ Particle_type

typedef T_Particle_with_annotations<typename Base::Particle_type, T_Name_and_radius_annotations< GeometricKernel::FT, SBL::Models::T_Dynamic_annotator_for_residues<>::template T_Annotations_with_dynamic< void > > > Particle_type
inherited

◆ Radius_annotator

◆ Self

typedef T_Pseudo_atom_per_residue_spec_with_flat_info_and_annotations_traits<Annotations, GeometricKernel, SystemItems> Self