SBL::GT Namespace Reference

Typedefs
template<class Move_Set_Selector , class ... Move_Set_Traits>
using	T_Combined_Move_Set_Traits_WL = T_Combined_Move_Set_Traits< Combined_WL_Move_Set_Data_Interface, Move_Set_Selector, Move_Set_Traits... >
	Combined Move Set WL provides an easy way to combine move sets for Wang Landau. The Move_Set_Selector should be a functor that returns an array containing the probability of using each move set, in the same order than the definition of the template parameters. More...
typedef std::pair< double, double >	Bin_energy_range
typedef int	Bin_index
using	Combined_MS_Traits = T_Combined_Move_Set_Traits_WL< Move_Set_Selector, No_Overstep_Cone_Move_Set_Traits, Gaussian_Move_Set_Traits >

Enumerations
enum class	DoS_save_frequency_type { Log_scale , Normal_scale }

Functions
template<typename T , T Begin, class Func , T ... Is>
constexpr void	static_for_impl (Func &&f, std::integer_sequence< T, Is... >)
template<typename T , T Begin, T End, class Func >
constexpr void	static_for (Func &&f)
template<class Tuple >
constexpr std::size_t	tuple_size (const Tuple &)
template<typename Tuple , typename F , std::size_t ... Indices>
void	for_each_impl (Tuple &&tuple, F &&f, std::index_sequence< Indices... >)
template<typename Tuple , typename F >
void	for_each (Tuple &&tuple, F &&f)
double	dist (std::vector< double > &a, std::vector< double > &b)
void	removeRow (Eigen::MatrixXd &matrix, unsigned int rowToRemove)
void	removeColumn (Eigen::MatrixXd &matrix, unsigned int colToRemove)
double &	get (double *A, int i, int j, int n, int m)
template<class K >
bool	is_in_convex_interior (typename K::FT *pt, double *A, double *b, int dim, int nhp)
template<class K >
Params< K >	getHMCTrajParams (typename K::FT xi, typename K::FT ui, typename K::FT a)
template<class K >
void	updateTrajNoReflection (typename K::FT *x, typename K::FT *u, typename K::FT a, typename K::FT t, int dim)
template<class K >
void	reflect (typename K::FT *u, typename K::FT *n, int dim)
template<class K >
K::FT	intersectionHMCPlane (typename K::FT *x, typename K::FT *u, double *A, double *b, typename K::FT a, int dim, int nhp, int index)
template<class K >
std::pair< typename K::FT, std::vector< typename K::FT > >	intersectionHMCPlanes (typename K::FT *x, typename K::FT *u, typename K::FT a, int dim, double *A, double *b, int nhp)
template<class K >
int	T_HMC_internal (typename K::FT *x, typename K::FT *u, double *A, double *b, int dim, int nhp, typename K::FT a, typename K::FT dist, int max_reflections)
int	HMC_internal_DP (double *x, double *u, double *A, double *b, int dim, int nhp, double a, double dist, int max_reflections)
int	HMC_internal_MP (const Data_MP &data)
	Take a step for HMC in multi-precision in a convex for a gaussian of variance sigma = 1/sqrt(2a). Returns the internal number of steps (aka the number of reflections). More...
std::vector< std::vector< double > >	read_CSV_Matrix (std::string filename)

---

Class Documentation

SBL::GT::T_Combined_Move_Params

struct SBL::GT::T_Combined_Move_Params

template<class Conformation, class ... Move_Set_Traits>
struct SBL::GT::T_Combined_Move_Params< Conformation, Move_Set_Traits >

Collect into a tuple the params of all move sets.

Class Members
	move_params

SBL::GT::T_Combined_Move_Stats

struct SBL::GT::T_Combined_Move_Stats

template<class Conformation, class ... Move_Set_Traits>
struct SBL::GT::T_Combined_Move_Stats< Conformation, Move_Set_Traits >

Collect into a tuple the stats of all move sets.

Class Members
bool	move_set_used
	move_stats

SBL::GT::T_Combined_Move_Set_Traits

class SBL::GT::T_Combined_Move_Set_Traits

template<template< class Base_Data_Interface, int i > class Combined_Move_Set_Data_Interface, class Move_Set_Selector, class ... Move_Set_Traits>
class SBL::GT::T_Combined_Move_Set_Traits< Combined_Move_Set_Data_Interface, Move_Set_Selector, Move_Set_Traits >

Class Members
	Controller
	Move_Set

SBL::GT::Darting_Move_Params

struct SBL::GT::Darting_Move_Params

Darting Move set Params.

SBL::GT::Darting_Move_Stats

struct SBL::GT::Darting_Move_Stats

Darting Move set Stats.

Class Members
int	ending_min
bool	move_set_used
double	p_xy
double	p_yx

SBL::GT::Darting_Move_Set_Traits

class SBL::GT::Darting_Move_Set_Traits

Darting Move set traits (see paper for details of internal working)

Class Members
typedef T_Darting_Move_Set_Controller< Conformation >	Controller
typedef T_Darting_Move_Set< Conformation >	Move_Set

SBL::GT::Gaussian_Move_Params

struct SBL::GT::Gaussian_Move_Params

Gaussian Move params.

Class Members
double	sigma

SBL::GT::Gaussian_Move_Stats

struct SBL::GT::Gaussian_Move_Stats

Gaussian Move Set stats.

Class Members
bool	move_set_used

SBL::GT::Gaussian_Move_Set_Traits

class SBL::GT::Gaussian_Move_Set_Traits

Gaussian Move Set, simplest move set provided. Propose a move sampled from a normal distribution centered on the starting point.

Class Members
typedef T_Gaussian_Move_Set_Controller< Conformation >	Controller
typedef T_Gaussian_Move_Set< Conformation >	Move_Set

SBL::GT::No_Overstep_Cone_Move_Params

struct SBL::GT::No_Overstep_Cone_Move_Params

No overstep cone move set params.

Class Members
pair< double, double >	bin_down
pair< double, double >	bin_up
Cone_Distribution< double * >	cone_distribution
Cone_Distribution< double * >	cone_distribution_down
Cone_Distribution< double * >	cone_distribution_up
pair< double, double >	current_bin
double	current_bin_density
bool	down
double	down_bin_density
double	proba_cone
bool	up
double	up_bin_density
bool	use_cone

SBL::GT::No_Overstep_Cone_Move_Stats

struct SBL::GT::No_Overstep_Cone_Move_Stats

No overstep cone move set stats.

Class Members
bool	interval_down
bool	interval_up
bool	move_set_used
int	num_interval
bool	sucess
bool	sucess_down
bool	sucess_same
bool	sucess_up
bool	try_down
bool	try_same
bool	try_up

SBL::GT::No_Overstep_Cone_Move_Set_Traits

class SBL::GT::No_Overstep_Cone_Move_Set_Traits

No overstep cone move set traits: a move set that aims to sample neighbourings energy strata, and uses the cone strategy for better mixing. See paper for details.

Class Members
typedef T_No_Overstep_Cone_Move_Set_Controller< Conformation >	Controller
typedef T_No_Overstep_Cone_Move_Set< Conformation >	Move_Set

SBL::GT::No_Overstep_Move_Params

struct SBL::GT::No_Overstep_Move_Params

No overstep move set params.

Class Members
pair< double, double >	bin_down
pair< double, double >	bin_up
pair< double, double >	current_bin
double	current_bin_density
bool	down
double	down_bin_density
bool	up
double	up_bin_density

SBL::GT::No_Overstep_Move_Stats

struct SBL::GT::No_Overstep_Move_Stats

No overstep move set stats.

Class Members
bool	interval_down
bool	interval_up
bool	move_set_used
int	num_interval
bool	sucess
bool	sucess_down
bool	sucess_same
bool	sucess_up
bool	try_down
bool	try_same
bool	try_up

SBL::GT::No_Overstep_Move_Set_Traits

class SBL::GT::No_Overstep_Move_Set_Traits

No overstep move set traits: a move set that aims to sample neighbourings energy strata. See paper for details.

Class Members
typedef T_No_Overstep_Move_Set_Controller< Conformation >	Controller
typedef T_No_Overstep_Move_Set< Conformation >	Move_Set

SBL::GT::Bin_properties_MS

class SBL::GT::Bin_properties_MS

template<class Move_Set_Controller_Data>
class SBL::GT::Bin_properties_MS< Move_Set_Controller_Data >

SBL::GT::T_DS_snapshot_default

class SBL::GT::T_DS_snapshot_default

template<class Bin_properties>
class SBL::GT::T_DS_snapshot_default< Bin_properties >

A class storing the main pieces of information, at a given time stamp in the course of the algorithm.

Class Members
double	averageInterbinSize
vector< Bin_properties >	bin_properties
vector< Bin_energy_range >	bin_ranges
vector< pair< uint64_t, uint64_t > >	climbs
vector< pair< uint64_t, uint64_t > >	descents
bool	exp_regime
int	gamma_index
double	increment
uint64_t	num_mixing
uint64_t	num_steps
uint64_t	num_steps_mixing

SBL::GT::T_Converter_geometric_objects_3_to_interval

class SBL::GT::T_Converter_geometric_objects_3_to_interval

template<class GeometricIntervalKernel3>
class SBL::GT::T_Converter_geometric_objects_3_to_interval< GeometricIntervalKernel3 >

Class Members
typedef Circle_3	Circle_3
typedef FT	FT
typedef Plane_3	Plane_3
typedef Point_3	Point_3
typedef T_Converter_geometric_objects_3_to_interval< GeometricIntervalKernel3 >	Self
typedef Sphere_3	Sphere_3
typedef Vector_3	Vector_3

SBL::GT::Params

struct SBL::GT::Params

template<class K>
struct SBL::GT::Params< K >

Class Members
FT	C
FT	phi
FT	w

SBL::GT::Data_MP

struct SBL::GT::Data_MP

Class Members
double *	A
double	a
double *	b
int	dim
int	max_reflections
int	nbr_hyperplanes
double	travel_time
double *	u
double *	u_out
double *	x
double *	x_out

SBL::GT::Inexact_predicates_kernel_for_frechet_mean

class SBL::GT::Inexact_predicates_kernel_for_frechet_mean

Class Members
typedef double	FT
typedef Inexact_predicates_kernel_for_frechet_mean	self

SBL::GT::Lazy_exact_predicates_kernel_for_frechet_mean

class SBL::GT::Lazy_exact_predicates_kernel_for_frechet_mean

Class Members
typedef Interval_nt< true >	FT
typedef Lazy_exact_predicates_kernel_for_frechet_mean	self
typedef Uncertain< bool >	Uncertain

SBL::GT::Trigonometric_interval_kernel

class SBL::GT::Trigonometric_interval_kernel

Class Members
typedef Interval_nt< false >	Interval
typedef Interval_nt< false >	Interval
typedef Trigonometric_interval_kernel	Self
typedef Trigonometric_interval_kernel	Self

SBL::GT::T_Union_of_balls_3_meidal_axis_vertex

class SBL::GT::T_Union_of_balls_3_meidal_axis_vertex

template<class Refs, class WeightedAlphaComplex3, class DelaunayTriangulation3>
class SBL::GT::T_Union_of_balls_3_meidal_axis_vertex< Refs, WeightedAlphaComplex3, DelaunayTriangulation3 >

SBL::GT::T_Union_of_balls_3_meidal_axis_halfedge

class SBL::GT::T_Union_of_balls_3_meidal_axis_halfedge

template<class Refs, class WeightedAlphaComplex3, class DelaunayTriangulation3>
class SBL::GT::T_Union_of_balls_3_meidal_axis_halfedge< Refs, WeightedAlphaComplex3, DelaunayTriangulation3 >

Typedef Documentation

Bin_energy_range

typedef std::pair<double, double> Bin_energy_range

Bin_index

typedef int Bin_index

Combined_MS_Traits

using Combined_MS_Traits = T_Combined_Move_Set_Traits_WL<Move_Set_Selector,No_Overstep_Cone_Move_Set_Traits,Gaussian_Move_Set_Traits>

T_Combined_Move_Set_Traits_WL

using T_Combined_Move_Set_Traits_WL = T_Combined_Move_Set_Traits<Combined_WL_Move_Set_Data_Interface, Move_Set_Selector,Move_Set_Traits...>

Combined Move Set WL provides an easy way to combine move sets for Wang Landau. The Move_Set_Selector should be a functor that returns an array containing the probability of using each move set, in the same order than the definition of the template parameters.

Enumeration Type Documentation

DoS_save_frequency_type

enum DoS_save_frequency_type

strong

Enumerator
Log_scale
Normal_scale

Function Documentation

dist()

double SBL::GT::dist	(	std::vector< double > &	a,
		std::vector< double > &	b
	)

for_each()

void SBL::GT::for_each	(	Tuple &&	tuple,
		F &&	f
	)

for_each_impl()

void SBL::GT::for_each_impl	(	Tuple &&	tuple,
		F &&	f,
		std::index_sequence< Indices... >
	)

get()

double& SBL::GT::get	(	double *	A,
		int	i,
		int	j,
		int	n,
		int	m
	)

getHMCTrajParams()

Params<K> SBL::GT::getHMCTrajParams	(	typename K::FT	xi,
		typename K::FT	ui,
		typename K::FT	a
	)

HMC_internal_DP()

int SBL::GT::HMC_internal_DP	(	double *	x,
		double *	u,
		double *	A,
		double *	b,
		int	dim,
		int	nhp,
		double	a,
		double	dist,
		int	max_reflections
	)

HMC_internal_MP()

int HMC_internal_MP

(

const Data_MP &

data

)

Take a step for HMC in multi-precision in a convex for a gaussian of variance sigma = 1/sqrt(2a). Returns the internal number of steps (aka the number of reflections).

Parameters

data	encapsulate all required parameters (for iRRAM). For details about these params, see T_HMC_internal ot HMC_internal_DP documentation

intersectionHMCPlane()

K::FT SBL::GT::intersectionHMCPlane	(	typename K::FT *	x,
		typename K::FT *	u,
		double *	A,
		double *	b,
		typename K::FT	a,
		int	dim,
		int	nhp,
		int	index
	)

intersectionHMCPlanes()

std::pair<typename K::FT,std::vector<typename K::FT> > SBL::GT::intersectionHMCPlanes	(	typename K::FT *	x,
		typename K::FT *	u,
		typename K::FT	a,
		int	dim,
		double *	A,
		double *	b,
		int	nhp
	)

is_in_convex_interior()

bool SBL::GT::is_in_convex_interior	(	typename K::FT *	pt,
		double *	A,
		double *	b,
		int	dim,
		int	nhp
	)

read_CSV_Matrix()

std::vector<std::vector<double> > SBL::GT::read_CSV_Matrix

(

std::string

filename

)

reflect()

void SBL::GT::reflect	(	typename K::FT *	u,
		typename K::FT *	n,
		int	dim
	)

removeColumn()

void SBL::GT::removeColumn	(	Eigen::MatrixXd &	matrix,
		unsigned int	colToRemove
	)

removeRow()

void SBL::GT::removeRow	(	Eigen::MatrixXd &	matrix,
		unsigned int	rowToRemove
	)

static_for()

constexpr void SBL::GT::static_for ( Func &&  f )

constexpr

static_for_impl()

constexpr void SBL::GT::static_for_impl ( Func &&  f, std::integer_sequence< T, Is... >    )

constexpr

T_HMC_internal()

int SBL::GT::T_HMC_internal	(	typename K::FT *	x,
		typename K::FT *	u,
		double *	A,
		double *	b,
		int	dim,
		int	nhp,
		typename K::FT	a,
		typename K::FT	dist,
		int	max_reflections
	)

tuple_size()

constexpr std::size_t SBL::GT::tuple_size ( const Tuple &  )

constexpr

updateTrajNoReflection()

void SBL::GT::updateTrajNoReflection	(	typename K::FT *	x,
		typename K::FT *	u,
		typename K::FT	a,
		typename K::FT	t,
		int	dim
	)