SBL::CSB Namespace Reference

Enumerations
enum	Alignment_substitution_matrix_type {   BLOSUM_30 , BLOSUM_45 , BLOSUM_62 , BLOSUM_80 ,   PAM_40 , PAM_120 , PAM_200 , PAM_250 ,   VTML_200 }

Functions
template<class Residue >
char	residue_to_one_letter_code (const Residue &res)
template<class NT >
bool	is_fake_particle (const SBL::Models::T_Atom_with_flat_info< NT > &p)
template<class NT >
bool	is_atom_particle (const SBL::Models::T_Atom_with_flat_info< NT > &p)
template<class System , class Point >
bool	is_fake_particle (const ESBTL::Molecular_atom< System, Point > &p)
template<class System , class Point >
bool	is_atom_particle (const ESBTL::Molecular_atom< System, Point > &p)

---

Class Documentation

SBL::CSB::T_Molecular_potential_energy_structure_parameters_traits_default

class SBL::CSB::T_Molecular_potential_energy_structure_parameters_traits_default

template<class CovalentStructure, class Parameters>
class SBL::CSB::T_Molecular_potential_energy_structure_parameters_traits_default< CovalentStructure, Parameters >

Class Members
typedef CovalentStructure	Covalent_structure
typedef Parameters	Potential_energy_parameters

SBL::CSB::T_Molecular_potential_energy_structure_parameters_traits_optimal

class SBL::CSB::T_Molecular_potential_energy_structure_parameters_traits_optimal

template<class CovalentStructureBase, class PotentialEnergyParametersBase>
class SBL::CSB::T_Molecular_potential_energy_structure_parameters_traits_optimal< CovalentStructureBase, PotentialEnergyParametersBase >

Class Members
typedef T_Molecular_covalent_structure_optimal< Particle_info >	Covalent_structure
typedef Particle_info	Particle_info
typedef T_Potential_energy_parameters_optimal< Covalent_structure, Unit_system_traits >	Potential_energy_parameters
typedef Unit_system_traits	Unit_system_traits

Enumeration Type Documentation

Alignment_substitution_matrix_type

enum Alignment_substitution_matrix_type

Enumerator
BLOSUM_30
BLOSUM_45
BLOSUM_62
BLOSUM_80
PAM_40
PAM_120
PAM_200
PAM_250
VTML_200

Function Documentation

is_atom_particle() [1/2]

bool SBL::CSB::is_atom_particle ( const ESBTL::Molecular_atom< System, Point > &  p )

inline

is_atom_particle() [2/2]

bool SBL::CSB::is_atom_particle ( const SBL::Models::T_Atom_with_flat_info< NT > &  p )

inline

is_fake_particle() [1/2]

bool SBL::CSB::is_fake_particle ( const ESBTL::Molecular_atom< System, Point > &  p )

inline

is_fake_particle() [2/2]

bool SBL::CSB::is_fake_particle ( const SBL::Models::T_Atom_with_flat_info< NT > &  p )

inline

residue_to_one_letter_code()

char SBL::CSB::residue_to_one_letter_code

(

const Residue &

res

)