MCI_bootstrap Class Reference

Public Member Functions
def	get_irreplaceable_contacts (self, consensus_contacts, solver_name, verbose)
	Return set of irreplaceable contacts Irreplaceable contacts – their absence is irreplaceable, such as those dimers and trimers (sometimes) More...
def	get_forbidden_sets_of_length (self, l, cons_set_init)
	Returns all set of forbidden contacts upto length l length l implies that 'l' contacts are forbidden at a time. More...
def	bootstrap (self, f_set_pool, cons_set_init, solver_name, verbose)
	steps: for 1 to len(Cons_init): fill forbidden_sets(l) for each forbidden set: find consensus_solution and take union print stats for length 1 to l_max More...

Detailed Description

A class to enrich set of initial consensus contacts by bootstraping procedure. A class to enrich set of initial consensus contacts by bootstraping procedure.

Member Function Documentation

bootstrap()

def bootstrap	(		self,
			f_set_pool,
			cons_set_init,
			solver_name,
			verbose
	)

steps: for 1 to len(Cons_init): fill forbidden_sets(l) for each forbidden set: find consensus_solution and take union print stats for length 1 to l_max

get_forbidden_sets_of_length()

def get_forbidden_sets_of_length	(		self,
			l,
			cons_set_init
	)

Returns all set of forbidden contacts upto length l length l implies that 'l' contacts are forbidden at a time.

get_irreplaceable_contacts()

def get_irreplaceable_contacts	(		self,
			consensus_contacts,
			solver_name,
			verbose
	)

Return set of irreplaceable contacts Irreplaceable contacts – their absence is irreplaceable, such as those dimers and trimers (sometimes)