T_Morse_theory_based_analyzer_module< ModuleTraits, MorseSmaleWittenChainComplex > Class Template Reference

Generic manager for reading arguments of the program and run the calculations More...

#include <Morse_theory_based_analyzer_module.hpp>

Static Public Member Functions
static boost::program_options::options_description *&	get_options (void)
	Access to the options' description of the module.

Mandatory Requirements
void	run (unsigned verbose, std::ostream &out) override
	Runs the module following the input options.
bool	is_runnable (void) const override
	Checks that all the input options were set.
void	statistics (std::ostream &out) override
	Reports high-level statistics on the module.
std::string	get_name (void) const override
	Returns the name of the package.

Optional Requirements
boost::program_options::options_description	add_options (void) override
	Virtual method for adding options to the module.
bool	check_options (std::string &message) const override
	Checks that the input options' values are coherent.
std::string	get_output_prefix (void) const override
	Returns a prefix that concatains the input line options used when running the module.
void	report (const std::string &prefix) override
	Reports the output and statistics in output files.

Modules Management
void	set_module_instance_name (const std::string &module_instance_name)
	Sets a name for this instance of this module. In particular, it will be used in the prefix of output files generated by a collection of modules.
const std::string &	get_module_instance_name (void) const
	Get the name of this instance of this module.
void	set_report_mode (std::ios_base::openmode report_mode)
	Set a report mode, that is open or append modes.
void	set_report_mode (std::ios_base::openmode &report_mode)
	Set a report mode, that is open or append modes.
const std::ios_base::openmode	get_report_mode (void) const
	Get the report mode to be used when reporting.

Optional Requirements
void	check_filesystem_directory_exists (const std::string &output_prefix)
	To avoid later crash: check filesystem / existence of directory / directory exists.

Others
template<class Self_>
Self_ *	clone (const Self_ *s) const
	Clones the object using the copy constructor.
virtual bool	is_logical_module (void) const
	Checks that this module defines a logical operator.
virtual bool	is_condition_module (void) const
	Checks that this module defines a condition operator.
virtual bool	operator() (void)
	Only for condition modules, for returning the predicate value.
virtual bool	is_modules_collection (void) const
	Checks that this module defines a collection of modules.

Detailed Description

template<class ModuleTraits, class MorseSmaleWittenChainComplex = typename ModuleTraits::Morse_Smale_Witten_chain_complex>
class SBL::Modules::T_Morse_theory_based_analyzer_module< ModuleTraits, MorseSmaleWittenChainComplex >

Generic manager for reading arguments of the program and run the calculations

Template Parameters

ModuleTraits

Model of a traits class defining the types used in the manager (see T_Conformational_clustering_traits).

Member Function Documentation

add_options()

template<class ModuleTraits, class MorseSmaleWittenChainComplex>

boost::program_options::options_description add_options ( void )

inlineoverridevirtual

Virtual method for adding options to the module.

Reimplemented from T_Module_option_description< Dummy >.

check_filesystem_directory_exists()

void check_filesystem_directory_exists ( const std::string & output_prefix )

inlineinherited

To avoid later crash: check filesystem / existence of directory / directory exists.

check_options()

template<class ModuleTraits, class MorseSmaleWittenChainComplex>

bool check_options ( std::string & message ) const

inlineoverridevirtual

Checks that the input options' values are coherent.

Reimplemented from T_Module_option_description< Dummy >.

clone()

template<class Self_>

Self_ * clone ( const Self_ * s ) const

inlineinherited

Clones the object using the copy constructor.

get_module_instance_name()

const std::string & get_module_instance_name ( void ) const

inlineinherited

Get the name of this instance of this module.

get_name()

template<class ModuleTraits, class MorseSmaleWittenChainComplex>

std::string get_name ( void ) const

inlineoverridevirtual

Returns the name of the package.

Reimplemented from Module_base.

get_options()

template<class Dummy = void>

boost::program_options::options_description *& get_options ( void )

inlinestaticinherited

Access to the options' description of the module.

get_output_prefix()

template<class ModuleTraits, class MorseSmaleWittenChainComplex>

std::string get_output_prefix ( void ) const

inlineoverridevirtual

Returns a prefix that concatains the input line options used when running the module.

Reimplemented from T_Module_option_description< Dummy >.

get_report_mode()

const std::ios_base::openmode get_report_mode ( void ) const

inlineinherited

Get the report mode to be used when reporting.

is_condition_module()

virtual bool is_condition_module ( void ) const

inlineprotectedvirtualinherited

Checks that this module defines a condition operator.

is_logical_module()

virtual bool is_logical_module ( void ) const

inlineprotectedvirtualinherited

Checks that this module defines a logical operator.

is_modules_collection()

virtual bool is_modules_collection ( void ) const

inlineprotectedvirtualinherited

Checks that this module defines a collection of modules.

is_runnable()

template<class ModuleTraits, class MorseSmaleWittenChainComplex>

bool is_runnable ( void ) const

inlineoverridevirtual

Checks that all the input options were set.

Reimplemented from Module_base.

operator()()

virtual bool operator() ( void )

inlineprotectedvirtualinherited

Only for condition modules, for returning the predicate value.

report()

template<class ModuleTraits, class MorseSmaleWittenChainComplex>

void report ( const std::string & prefix )

inlineoverridevirtual

Reports the output and statistics in output files.

Reimplemented from Module_base.

run()

template<class ModuleTraits, class MorseSmaleWittenChainComplex>

void run ( unsigned verbose, std::ostream & out )

inlineoverridevirtual

Runs the module following the input options.

Implements Module_base.

set_module_instance_name()

void set_module_instance_name ( const std::string & module_instance_name )

inlineinherited

Sets a name for this instance of this module. In particular, it will be used in the prefix of output files generated by a collection of modules.

set_report_mode() [1/2]

void set_report_mode ( std::ios_base::openmode & report_mode )

inlineinherited

Set a report mode, that is open or append modes.

set_report_mode() [2/2]

void set_report_mode ( std::ios_base::openmode report_mode )

inlineinherited

Set a report mode, that is open or append modes.

statistics()

template<class ModuleTraits, class MorseSmaleWittenChainComplex>

void statistics ( std::ostream & out )

inlineoverridevirtual

Reports high-level statistics on the module.

Reimplemented from Module_base.