Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
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#include <Clustering_loader_with_graph.hpp>
Public Types | |
typedef T_Clustering_loader< Clustering > | Self |
typedef SBL::IO::Loader_base | Base |
typedef Clustering::value_type | Cluster |
typedef T_Clustering_loader< Graph, Clustering > | Self |
typedef SBL::IO::Loader_base | Base |
typedef Clustering::value_type | Cluster |
typedef boost::graph_traits< Graph >::vertex_descriptor | Graph_vertex |
typedef std::vector< Graph_vertex > | Graph_part |
Static Public Member Functions | |
static boost::program_options::options_description *& | get_options (void) |
Access to the options' description of the module. More... | |
static bool | has_options (void) |
static void | delete_options (void) |
static void | initialize_options (const std::string &caption) |
Attributes | |
T_Clustering_loader (void) | |
T_Clustering_loader (const Self &other) | |
T_Clustering_loader (void) | |
T_Clustering_loader (const Self &other) | |
Mandatory Requirements | |
boost::program_options::options_description | add_options (void) const |
Virtual method for adding options to the module. More... | |
bool | load (unsigned verbose, std::ostream &out) |
Loads the data. More... | |
bool | check_options (std::string &message) const |
Checks that the input options' values are coherent. More... | |
std::string | get_output_prefix (void) const |
Returns a prefix that concatains the input line options used when running the module. More... | |
std::string | get_name (void) const |
Return the name of the class itself. More... | |
Clustering & | get_clustering (unsigned index) |
bool | build () |
bool | read_one_clustering_per_file () |
void | read_clustering_from_file (std::string filename, Clustering &c) |
bool | read_two_clusterings_one_file () |
void | statistics (std::ostream &out) |
Print high level statistics on the loaded files. More... | |
boost::program_options::options_description | add_options (void) const |
Virtual method for adding options to the module. More... | |
bool | load (unsigned verbose, std::ostream &out) |
Loads the data. More... | |
bool | check_options (std::string &message) const |
Checks that the input options' values are coherent. More... | |
std::string | get_output_prefix (void) const |
Returns a prefix that concatains the input line options used when running the module. More... | |
std::string | get_name (void) const |
Return the name of the class itself. More... | |
void | statistics (std::ostream &out) |
Print high level statistics on the loaded files. More... | |
Clustering & | get_clustering (unsigned index) |
Graph * | get_graph () |
void | add_file_name (const std::string &file_name) |
bool | build () |
bool | read_one_clustering_per_file () |
void | read_clustering_from_file (std::string filename, Clustering &c) |
bool | read_two_clusterings_one_file () |
void | build_graph (Clustering &clustering_one, Clustering &clustering_two) |
unsigned | get_weight (const Cluster *struct_one, const Cluster *struct_two) const |
Management | |
void | set_loader_instance_name (const std::string &loader_instance_name) |
const std::string & | get_loader_instance_name (void) const |
typedef SBL::IO::Loader_base Base |
typedef SBL::IO::Loader_base Base |
typedef Clustering::value_type Cluster |
typedef Clustering::value_type Cluster |
typedef std::vector<Graph_vertex> Graph_part |
typedef boost::graph_traits<Graph>::vertex_descriptor Graph_vertex |
typedef T_Clustering_loader<Clustering> Self |
typedef T_Clustering_loader<Graph, Clustering> Self |
T_Clustering_loader | ( | void | ) |
T_Clustering_loader | ( | const Self & | other | ) |
T_Clustering_loader | ( | void | ) |
T_Clustering_loader | ( | const Self & | other | ) |
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inline |
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inlinevirtual |
Virtual method for adding options to the module.
Reimplemented from T_Module_option_description< Dummy >.
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inlinevirtual |
Virtual method for adding options to the module.
Reimplemented from T_Module_option_description< Dummy >.
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inline |
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inline |
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inline |
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inlinevirtual |
Checks that the input options' values are coherent.
Reimplemented from T_Module_option_description< Dummy >.
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inlinevirtual |
Checks that the input options' values are coherent.
Reimplemented from T_Module_option_description< Dummy >.
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inlinestaticinherited |
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inline |
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inline |
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inline |
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inlineinherited |
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inlinevirtual |
Return the name of the class itself.
Reimplemented from Loader_base.
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inlinevirtual |
Return the name of the class itself.
Reimplemented from Loader_base.
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inlinestaticinherited |
Access to the options' description of the module.
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inlinevirtual |
Returns a prefix that concatains the input line options used when running the module.
Reimplemented from T_Module_option_description< Dummy >.
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inlinevirtual |
Returns a prefix that concatains the input line options used when running the module.
Reimplemented from T_Module_option_description< Dummy >.
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inlinestaticinherited |
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inlinestaticinherited |
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inlinevirtual |
Loads the data.
Reimplemented from Loader_base.
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inlinevirtual |
Loads the data.
Reimplemented from Loader_base.
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inline |
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inline |
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inline |
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inline |
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inline |
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inline |
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inlineinherited |
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inline |
Print high level statistics on the loaded files.
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inline |
Print high level statistics on the loaded files.