T_Squared_RMSD_internal_distance< Conformation, InternalDistance, GetParticle, MolecularAlignment > Class Template Reference

Model of Distance for defining distance between two conformations. More...

#include <Squared_RMSD_internal_distance.hpp>

Public Types
typedef T_Squared_RMSD_internal_distance< Conformation, InternalDistance, GetParticle, MolecularAlignment >	Self
typedef Conformation	Point
typedef SBL::Models::T_Conformation_traits< Point >	Conformation_traits
typedef InternalDistance::FT	FT

Public Member Functions
	T_Squared_RMSD_internal_distance (void)
	~T_Squared_RMSD_internal_distance (void)
void	set_internal_distance (InternalDistance &internal_distance)
void	set_alignment (MolecularAlignment &alignment)
void	set_get_particle (GetParticle &get_particle)
FT	operator() (const Conformation &p, const Conformation &q) const
template<class OutputIterator >
OutputIterator	internal_distances (const Conformation &p, OutputIterator out) const

Detailed Description

template<class Conformation, class InternalDistance, class GetParticle = T_Get_particle_default<Conformation, typename InternalDistance::Point>, class MolecularAlignment = Molecular_alignment_default>
class SBL::CSB::T_Squared_RMSD_internal_distance< Conformation, InternalDistance, GetParticle, MolecularAlignment >

Model of Distance for defining distance between two conformations.

NT: should be (double, float, or even complex)

Member Typedef Documentation

Conformation_traits

typedef SBL::Models::T_Conformation_traits<Point> Conformation_traits

FT

typedef InternalDistance::FT FT

Point

typedef Conformation Point

Self

typedef T_Squared_RMSD_internal_distance<Conformation, InternalDistance, GetParticle, MolecularAlignment> Self

Constructor & Destructor Documentation

T_Squared_RMSD_internal_distance()

T_Squared_RMSD_internal_distance ( void  )

inline

~T_Squared_RMSD_internal_distance()

~T_Squared_RMSD_internal_distance ( void  )

inline

Member Function Documentation

internal_distances()

OutputIterator internal_distances ( const Conformation &  p, OutputIterator  out  ) const

inline

operator()()

T_Squared_RMSD_internal_distance< Conformation, InternalDistance, GetParticle, MolecularAlignment >::FT operator() ( const Conformation &  p, const Conformation &  q  ) const

inline

set_alignment()

void set_alignment

(

MolecularAlignment &

alignment

)

set_get_particle()

void set_get_particle

(

GetParticle &

get_particle

)

set_internal_distance()

void set_internal_distance

(

InternalDistance &

internal_distance

)