![]() |
Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
|
Functions | |
def | get_set_of_contacts (contact_count_map) |
def | extract_all_contacts (contact_counts_maps) |
def | get_format_string (alphas_list) |
def | get_table_header_beg (alphas_list) |
def | get_body_line (contact, contact_counts_maps, set_of_ref_contacts, alphas_list) |
def | get_table_body (contact_counts_maps, list_nb_sol, list_soln_size, alphas_list, set_of_ref_contacts) |
def | get_table_header_end () |
def | dump_table (list_contact_counts_map, list_nb_sol, list_soln_size, alphas_list, ftable, fname_ref_data) |
def | edge (u, v) |
Variables | |
dictionary | alpha_0 = { "(a,b)": 1, "(b,c)": 3}; |
dictionary | alpha_0dot5 = { "(a,b)": 1, "(b,c)": 3}; |
dictionary | alpha_1 = { "(a,b)": 1, "(b,c)": 3}; |
list | contact_counts_maps = [alpha_0, alpha_0dot5, alpha_1]; |
def SBL.mci_table.dump_table | ( | list_contact_counts_map, | |
list_nb_sol, | |||
list_soln_size, | |||
alphas_list, | |||
ftable, | |||
fname_ref_data | |||
) |
def SBL.mci_table.edge | ( | u, | |
v | |||
) |
This method is to be consistent with global assumption that for an edge e=(u,v) we have u<v.
def SBL.mci_table.extract_all_contacts | ( | contact_counts_maps | ) |
def SBL.mci_table.get_body_line | ( | contact, | |
contact_counts_maps, | |||
set_of_ref_contacts, | |||
alphas_list | |||
) |
def SBL.mci_table.get_format_string | ( | alphas_list | ) |
def SBL.mci_table.get_set_of_contacts | ( | contact_count_map | ) |
def SBL.mci_table.get_table_body | ( | contact_counts_maps, | |
list_nb_sol, | |||
list_soln_size, | |||
alphas_list, | |||
set_of_ref_contacts | |||
) |
def SBL.mci_table.get_table_header_beg | ( | alphas_list | ) |
def SBL.mci_table.get_table_header_end | ( | ) |
dictionary alpha_0 = { "(a,b)": 1, "(b,c)": 3}; |
dictionary alpha_0dot5 = { "(a,b)": 1, "(b,c)": 3}; |
dictionary alpha_1 = { "(a,b)": 1, "(b,c)": 3}; |
list contact_counts_maps = [alpha_0, alpha_0dot5, alpha_1]; |