Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
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Constructions | |
def | __init__ (self, ppi_graph_file_name) |
Default constructor. More... | |
Statistics | |
def | get_reachability_matrix (self) |
Generates the reachability matrix for the PPIN. More... | |
def | get_node_degrees (self) |
Gets a list with the node degrees. More... | |
Visualizations | |
def | plot_degree_distribution (self, show=False, figure_format='pdf', logscale=False) |
Plots a histogram of the degrees of the nodes on the network. More... | |
Other | |
def | summary (self) |
Prints a summary of the network: number of nodes, of edges (and arcs), and number of self-interactions. More... | |
A class performing statistical analysis on a PPIN A class performing statistical analysis on a PPIN.
def __init__ | ( | self, | |
ppi_graph_file_name | |||
) |
Default constructor.
def get_node_degrees | ( | self | ) |
Gets a list with the node degrees.
def get_reachability_matrix | ( | self | ) |
Generates the reachability matrix for the PPIN.
def plot_degree_distribution | ( | self, | |
show = False , |
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figure_format = 'pdf' , |
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logscale = False |
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) |
Plots a histogram of the degrees of the nodes on the network.
def summary | ( | self | ) |
Prints a summary of the network: number of nodes, of edges (and arcs), and number of self-interactions.