Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
find_taxonomic_information Namespace Reference

Variables

 parser = OptionParser()
 
 dest
 
 type
 
 help
 
 uniprot_dir = SBL.get_env_or_die("UNIPROT_DIR")
 
 ncbi_dir = SBL.get_env_or_die("NCBI_DIR")
 
 options
 
 args
 
 uni = Uniprot_wrapper(uniprot_dir)
 
 ncbi = NCBI_wrapper(ncbi_dir)
 
 accesion_file = open(accession_file)
 
 taxid = uni.get_ncbi_taxid(accession)
 
 name = ncbi.get_name(taxid)
 
 rank = ncbi.get_rank(taxid)
 

Variable Documentation

◆ accesion_file

accesion_file = open(accession_file)

◆ args

args

◆ dest

dest

◆ help

help

◆ name

name = ncbi.get_name(taxid)

◆ ncbi

◆ ncbi_dir

ncbi_dir = SBL.get_env_or_die("NCBI_DIR")

◆ options

options

◆ parser

parser = OptionParser()

◆ rank

rank = ncbi.get_rank(taxid)

◆ taxid

taxid = uni.get_ncbi_taxid(accession)

◆ type

type

◆ uni

◆ uniprot_dir

uniprot_dir = SBL.get_env_or_die("UNIPROT_DIR")