Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
extract-wales-graph Namespace Reference

Variables

 parser = OptionParser()
 
 dest
 
 type
 
 help
 
 default
 
 options
 
 args
 
 mPoints = open(options.minima).readlines()
 
 mEnergies = open(options.energies_minima).readlines()
 
 tPoints = open(options.transitions).readlines()
 
 tEnergies = open(options.energies_transitions).readlines()
 
 fp = open(options.graph)
 
list ts = []
 
dictionary T = {}
 
 ms = line.replace("\n", "").split()
 
 m1 = int(ms[0])
 
 m2 = int(ms[1])
 
list minima = []
 
dictionary tts = {}
 
list queue = [0]
 
list m = queue[0]
 
list candidates = []
 
 n = len(candidates)
 
 d = options.degree
 
 p = float(d)/float(n)
 
list transitions = []
 
 fpmp = open("reduced_minima_points.txt", "w")
 
 fpme = open("reduced_minima_energies.txt", "w")
 
 fptp = open("reduced_transitions_points.txt", "w")
 
 fpte = open("reduced_transitions_energies.txt", "w")
 
 fpg = open("reduced_graph.txt", "w")
 

Variable Documentation

◆ args

args

◆ candidates

list candidates = []

◆ d

d = options.degree

◆ default

default

◆ dest

dest

◆ fp

fp = open(options.graph)

◆ fpg

fpg = open("reduced_graph.txt", "w")

◆ fpme

fpme = open("reduced_minima_energies.txt", "w")

◆ fpmp

fpmp = open("reduced_minima_points.txt", "w")

◆ fpte

fpte = open("reduced_transitions_energies.txt", "w")

◆ fptp

fptp = open("reduced_transitions_points.txt", "w")

◆ help

help

◆ m

list m = queue[0]

◆ m1

m1 = int(ms[0])

◆ m2

list m2 = int(ms[1])

◆ mEnergies

mEnergies = open(options.energies_minima).readlines()

◆ minima

list minima = []

◆ mPoints

mPoints = open(options.minima).readlines()

◆ ms

ms = line.replace("\n", "").split()

◆ n

n = len(candidates)

◆ options

options

◆ p

int p = float(d)/float(n)

◆ parser

parser = OptionParser()

◆ queue

list queue = [0]

◆ T

dictionary T = {}

◆ tEnergies

tEnergies = open(options.energies_transitions).readlines()

◆ tPoints

tPoints = open(options.transitions).readlines()

◆ transitions

transitions = []

◆ ts

list ts = []

◆ tts

dictionary tts = {}

◆ type

type