This is the complete list of members for KpaxPostAnalyzer, including all inherited members.
| __init__(self, Path output_dir, Path post_dir, int gap=5, Optional[str] viewer=None, bool chains_visible_default=True) | KpaxPostAnalyzer | |
| _align_second_structure_with_kabsch(self, Path pdb1, Path pdb2) | KpaxPostAnalyzer | protected |
| _apply_rigid_transform_to_pdb(Path src_pdb, Path dst_pdb, R, t) | KpaxPostAnalyzer | protectedstatic |
| _copy_alignment_file(self) | KpaxPostAnalyzer | protected |
| _copy_structures_to_post(self, List[Path] pdb_paths) | KpaxPostAnalyzer | protected |
| _extract_pdb_files_from_log(self) | KpaxPostAnalyzer | protected |
| _extract_protein_details_and_statistics(self, List[str] lines) | KpaxPostAnalyzer | protected |
| _find_first_by_patterns(self, Iterable[str] patterns) | KpaxPostAnalyzer | protected |
| _format_statistics_line(self, str line) | KpaxPostAnalyzer | protected |
| _load_ca_coordinates(Path pdb_path) | KpaxPostAnalyzer | protectedstatic |
| _parse_alignment_pairs(self, Path alignment_path) | KpaxPostAnalyzer | protected |
| _parse_log(self) | KpaxPostAnalyzer | protected |
| _render_dot_to_pdf(self, Path dot_file, Path pdf_out) | KpaxPostAnalyzer | protected |
| _write_pdf_titles(self, Dict[str, str] pdf_titles) | KpaxPostAnalyzer | protected |
| _write_summary(self, List[str] events, List[str] issues) | KpaxPostAnalyzer | protected |
| prepare_ngl_visualization(self, List[Path] pdb_paths) | KpaxPostAnalyzer | |
| prepare_pymol_visualization(self, List[Path] pdb_paths) | KpaxPostAnalyzer | |
| prepare_viewer_files(self) | KpaxPostAnalyzer | |
| prepare_vmd_visualization(self, List[Path] pdb_paths) | KpaxPostAnalyzer | |
| run(self) | KpaxPostAnalyzer | |
1.14.0