Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
PALSE_xml_DB Member List

This is the complete list of members for PALSE_xml_DB, including all inherited members.

__collect_boost_ids_recursive__(self, tree, id_dict)PALSE_xml_DB
__duplicate_boost_id_reference_recursive__(self, tree, id_dict)PALSE_xml_DB
__get_intersection_of_paths__(self, paths_1, paths_2)PALSE_xml_DB
__get_path_recursive__(self, tree, path, paths)PALSE_xml_DB
__init__(self)PALSE_xml_DB
__len__(self)PALSE_xml_DB
__make_path_strings_as_list_recursive__(self, path, paths)PALSE_xml_DB
__make_path_strings_as_xml_recursive__(self, deepness, paths)PALSE_xml_DB
add_namespace(self, prefix, uri)PALSE_xml_DB
add_pdb_namespaces(self)PALSE_xml_DB
add_XML_etree(self, my_tree, tree_name)PALSE_xml_DB
append(self, et)PALSE_xml_DB
convert_prefix_to_uri(self, xpath_query)PALSE_xml_DB
databasePALSE_xml_DB
duplicate_boost_archive_references(self)PALSE_xml_DB
filenamesPALSE_xml_DB
filter_elements_by_data_values_compare_to(self, elements, xpath_query, data_value, comp)PALSE_xml_DB
filter_elements_by_data_values_equal_to(self, elements, xpath_query, data_value)PALSE_xml_DB
filter_elements_by_data_values_geq_than(self, elements, xpath_query, data_value)PALSE_xml_DB
filter_elements_by_data_values_greater_than(self, elements, xpath_query, data_value)PALSE_xml_DB
filter_elements_by_data_values_leq_than(self, elements, xpath_query, data_value)PALSE_xml_DB
filter_elements_by_data_values_lower_than(self, elements, xpath_query, data_value)PALSE_xml_DB
get_all_data_values_from_database(self, xpath_query, type=str)PALSE_xml_DB
get_all_data_values_from_database_compare_to(self, xpath_query, type, data_value, comp)PALSE_xml_DB
get_all_data_values_from_database_equal_to(self, xpath_query, type, data_value)PALSE_xml_DB
get_all_data_values_from_database_greater_than(self, xpath_query, type, data_value)PALSE_xml_DB
get_all_data_values_from_database_lower_than(self, xpath_query, type, data_value)PALSE_xml_DB
get_all_data_values_from_elements(self, elements, xpath_query, type=str)PALSE_xml_DB
get_all_data_values_from_root(self, xpath_query, root, type=str)PALSE_xml_DB
get_all_data_values_from_tree(self, xpath_query, my_tree, type=str)PALSE_xml_DB
get_all_elements_from_database(self, xpath_query)PALSE_xml_DB
get_all_elements_from_root(self, xpath_query, root)PALSE_xml_DB
get_all_elements_from_tree(self, xpath_query, my_tree)PALSE_xml_DB
get_attribute(self, xpath_query)PALSE_xml_DB
get_common_hierarchy(self)PALSE_xml_DB
get_common_hierarchy_as_list(self)PALSE_xml_DB
get_common_hierarchy_as_xml(self)PALSE_xml_DB
get_data_source_file(self, xpath_query, data_value, type=str)PALSE_xml_DB
get_filenames(self)PALSE_xml_DB
get_leftmost_data_value_from_tree(self, xpath_query, my_tree, type=str)PALSE_xml_DB
get_leftmost_data_values_from_database(self, xpath_query, type=str)PALSE_xml_DB
get_rightmost_data_value_from_tree(self, xpath_query, my_tree, type=str)PALSE_xml_DB
get_rightmost_data_values_from_database(self, xpath_query, type=str)PALSE_xml_DB
input_dirPALSE_xml_DB
input_file_filter_strPALSE_xml_DB
is_data_value_in_tree(self, xpath_query, my_tree, data_value, type=str)PALSE_xml_DB
load_from_directory(self, input_dir, regex="", subdirs=False)PALSE_xml_DB
re_attribPALSE_xml_DB
sort_databases(self, varname, type=str, options_suffix="__options.xml")PALSE_xml_DB