Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine > Member List

This is the complete list of members for T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >, including all inherited members.

add_options() constT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inlinevirtual
Aligned_pair typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
Aligner_algorithm typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngine >
Alignment_engine typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
Alignment_residue typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
Alignment_type typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
Atom typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
Base typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
check_options(std::string &message) constT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inlinevirtual
clone(const Self_ *s) constModule_baseinline
delete_options(void)T_Module_option_description< Dummy >inlinestatic
FT typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngine >
get_aligned_structure_1()T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_aligned_structure_2()T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_aligner_algorithm(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngine >inline
get_aligner_algorithm(void) constT_Alignment_structures_module< ModuleTraits, AlignmentEngine >inline
get_alignment(void) constT_Alignment_structures_module< ModuleTraits, AlignmentEngine >inline
get_alignment_engine(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngine >inline
get_alignment_engine(void) constT_Alignment_structures_module< ModuleTraits, AlignmentEngine >inline
get_alignment_lRMSD() constT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_alignment_viewer_name(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngine >inlinestatic
get_distance_RMSD() constT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_first_chain_motif_as_residue_set(void)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_first_structure(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngine >inline
get_first_structure_score_ordering(OutputIterator out)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_identity_percentage() constT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_lrmsd_ratio(void)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_module_instance_name(void) constModule_baseinline
get_name(void) constT_Alignment_structures_module< ModuleTraits, AlignmentEngine >inlinevirtual
get_options(void) constT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_options(void)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_output_prefix(void) constT_Module_option_description< Dummy >inlinevirtual
get_percentage_length_type(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngine >inlinestatic
get_report_mode(void) constModule_baseinline
get_second_chain_motif_as_residue_set(void)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_second_structure(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngine >inline
get_second_structure_score_ordering(OutputIterator out)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_shelf()T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inlinestatic
get_similarity_percentage() constT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_size() constT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
get_size_threshold(void)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inlinestatic
get_substition_matrix_type(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngine >inlinestatic
has_options(void)T_Module_option_description< Dummy >inlinestatic
initialize_engine(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngine >inline
initialize_options(const std::string &caption)T_Module_option_description< Dummy >inlinestatic
is_condition_module(void) constModule_baseinlineprotectedvirtual
is_logical_module(void) constModule_baseinlineprotectedvirtual
is_modules_collection(void) constModule_baseinlineprotectedvirtual
is_runnable(void) constT_Alignment_structures_module< ModuleTraits, AlignmentEngine >inlinevirtual
is_structural_motif(void) constT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
LRMSD enum valueT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
Module_base(void)Module_baseinline
Molecular_distance typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngine >
Molecular_system typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
operator()(void)Module_baseinlineprotectedvirtual
print_alignment(const std::string &filename)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
RANDOM enum valueT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
report(const std::string &prefix)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inlinevirtual
Residue_set typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
run(unsigned verbose, std::ostream &out)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inlinevirtual
run_type enum nameT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
SCORE enum valueT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
Score_ordering_computer typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
Self typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
Sequence_length_type typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
serialize(Archive &ar, const unsigned BOOST_PFTO int version)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
set_module_instance_name(const std::string &module_instance_name)Module_baseinline
set_persistence_one(std::pair< double, double > persistence)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
set_persistence_two(std::pair< double, double > persistence)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
set_reference_lrmsd(double lrmsd)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inlinestatic
set_report_mode(std::ios_base::openmode report_mode)Module_baseinline
set_report_mode(std::ios_base::openmode &report_mode)Module_baseinline
set_run_type(run_type new_type)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
Shelf typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
statistics(std::ostream &out)T_Alignment_structures_module< ModuleTraits, AlignmentEngine >inlinevirtual
Structure typedefT_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >
Structure_unit typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngine >
T_Pairwise_structural_alignment_module(void)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
T_Pairwise_structural_alignment_module(const Self &other)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
write_pymol_script(const std::string &filename)T_Pairwise_structural_alignment_module< ModuleTraits, AlignmentEngine >inline
~Module_base(void)Module_baseinlinevirtual