Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures > Member List

This is the complete list of members for T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >, including all inherited members.

add_options() constT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inlinevirtual
Aligner_algorithm typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
Alignment_engine typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
Alignment_type typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
Base typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
check_options(std::string &message) constT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inlinevirtual
clone(const Self_ *s) constModule_baseinline
delete_options(void)T_Module_option_description< Dummy >inlinestatic
FT typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
get_aligner_algorithm(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inline
get_aligner_algorithm(void) constT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inline
get_alignment(void) constT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inline
get_alignment_engine(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inline
get_alignment_engine(void) constT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inline
get_alignment_viewer_name(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inlinestatic
get_first_structure(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inline
get_module_instance_name(void) constModule_baseinline
get_name(void) constT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inlinevirtual
get_options(void)T_Module_option_description< Dummy >inlinestatic
get_output_prefix(void) constT_Module_option_description< Dummy >inlinevirtual
get_percentage_length_type(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inlinestatic
get_report_mode(void) constModule_baseinline
get_second_structure(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inline
get_substition_matrix_type(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inlinestatic
has_options(void)T_Module_option_description< Dummy >inlinestatic
initialize_engine(void)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inline
initialize_options(const std::string &caption)T_Module_option_description< Dummy >inlinestatic
is_condition_module(void) constModule_baseinlineprotectedvirtual
is_logical_module(void) constModule_baseinlineprotectedvirtual
is_modules_collection(void) constModule_baseinlineprotectedvirtual
is_runnable(void) constT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inlinevirtual
Module_base(void)Module_baseinline
Molecular_distance typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
operator()(void)Module_baseinlineprotectedvirtual
report(const std::string &prefix)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inlinevirtual
run(unsigned verbose, std::ostream &out)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inlinevirtual
Self typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
Sequence_length_type typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
set_module_instance_name(const std::string &module_instance_name)Module_baseinline
set_report_mode(std::ios_base::openmode report_mode)Module_baseinline
set_report_mode(std::ios_base::openmode &report_mode)Module_baseinline
statistics(std::ostream &out)T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >inlinevirtual
Structure typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
Structure_unit typedefT_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
~Module_base(void)Module_baseinlinevirtual