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Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
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Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
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This is the complete list of members for Module_based_workflow, including all inherited members.
| add_helper(const std::string &helper) | T_Module_based_workflow< Dummy > | inline |
| add_loader(const std::string &name="") | T_Module_based_workflow< Dummy > | inline |
| add_loader(Loader &loader, const std::string &name="") | T_Module_based_workflow< Dummy > | inline |
| add_options(void) | T_Module_option_description< Dummy > | inlinevirtual |
| check_filesystem_directory_exists(const std::string &output_prefix) | Module_base | inline |
| check_options(std::string &message) const | T_Module_option_description< Dummy > | inlinevirtual |
| clone(const Self_ *s) const | Module_base | inline |
| Edge typedef | T_Module_based_workflow< Dummy > | |
| get_module_instance_name(void) const | Module_base | inline |
| get_name(void) const override | T_Module_based_workflow< Dummy > | inlinevirtual |
| get_options(void) | T_Module_option_description< Dummy > | inlinestatic |
| get_output_prefix(void) const override | T_Module_based_workflow< Dummy > | inlinevirtual |
| get_report_mode(void) const | Module_base | inline |
| is_condition_module(void) const | Module_base | inlineprotectedvirtual |
| is_logical_module(void) const | Module_base | inlineprotectedvirtual |
| is_modules_collection(void) const | Module_base | inlineprotectedvirtual |
| is_runnable(void) const override | T_Module_based_workflow< Dummy > | inlinevirtual |
| is_valid_workflow(unsigned verbose, std::ostream &out) const | T_Module_based_workflow< Dummy > | inline |
| load(std::size_t i) | T_Module_based_workflow< Dummy > | inline |
| load(void) | T_Module_based_workflow< Dummy > | inline |
| log(void) | T_Module_based_workflow< Dummy > | inline |
| make_condition(Vertex u, const Predicate &P, Vertex v, const UpdateIfTrue &update_true, const std::string &predicate_name, const std::string &update_name="") | T_Module_based_workflow< Dummy > | inline |
| make_condition(Vertex u, const Predicate &P, Vertex v, const UpdateIfTrue &update_true, Vertex w, const UpdateIfFalse &update_false, const std::string &predicate_name, const std::string &update_name="") | T_Module_based_workflow< Dummy > | inline |
| make_conjunction(Vertex u, Vertex v) | T_Module_based_workflow< Dummy > | inline |
| make_module_flow(Vertex u, Vertex v, const Transformer &join, const std::string &name="") | T_Module_based_workflow< Dummy > | inline |
| make_optional_module(Vertex u, const std::string &option_name, const std::string &option_helper) | T_Module_based_workflow< Dummy > | inline |
| make_start_condition(const Predicate &P, Vertex v, const UpdateIfTrue &update_true, const std::string &predicate_name, const std::string &update_name="") | T_Module_based_workflow< Dummy > | inline |
| make_start_condition(const Predicate &P, Vertex v, const UpdateIfTrue &update_true, Vertex w, const UpdateIfFalse &update_false, const std::string &predicate_name, const std::string &update_name="") | T_Module_based_workflow< Dummy > | inline |
| Module_based_workflow(const std::string &application_name="no-application-name") | Module_based_workflow | inline |
| operator()(void) | Module_base | inlineprotectedvirtual |
| parse_command_line(int argc, char *argv[]) | T_Module_based_workflow< Dummy > | inline |
| register_module(const std::string &name="") | T_Module_based_workflow< Dummy > | inline |
| register_module(Module_base &module, const std::string &name="") | T_Module_based_workflow< Dummy > | inline |
| report(const std::string &prefix) override | T_Module_based_workflow< Dummy > | inlinevirtual |
| run(unsigned verbose, std::ostream &out) override | T_Module_based_workflow< Dummy > | inlinevirtual |
| set_end_module(Vertex u) | T_Module_based_workflow< Dummy > | inline |
| set_module_instance_name(const std::string &module_instance_name) | Module_base | inline |
| set_report_mode(std::ios_base::openmode report_mode) | Module_base | inline |
| set_report_mode(std::ios_base::openmode &report_mode) | Module_base | inline |
| set_start_module(Vertex u) | T_Module_based_workflow< Dummy > | inline |
| start(void) | T_Module_based_workflow< Dummy > | inline |
| statistics(std::ostream &out) override | T_Module_based_workflow< Dummy > | inlinevirtual |
| T_Module_based_workflow(const std::string &application_name) | T_Module_based_workflow< Dummy > | inline |
| verbose(void) const | T_Module_based_workflow< Dummy > | inline |
| Vertex typedef | T_Module_based_workflow< Dummy > | |
| ~T_Module_based_workflow(void) | T_Module_based_workflow< Dummy > | inline |
1.9.1