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Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
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Loader for exactly two sequences. More...
#include <Sequences_loader.hpp>
Public Types | |
typedef T_Sequences_loader< FT > | Self |
typedef SBL::IO::Loader_base | Base |
typedef std::vector< std::string > | Clonotype |
typedef std::vector< Clonotype > | Clonotype_ensemble |
Static Public Member Functions | |
static boost::program_options::options_description *& | get_options (void) |
Access to the options' description of the module. More... | |
static bool | has_options (void) |
static void | delete_options (void) |
static void | initialize_options (const std::string &caption) |
Constructors | |
T_Sequences_loader (void) | |
Default constructor. More... | |
Options Descriptions | |
bool | check_options (std::string &message) const |
Check that the parsed options are valid for this loader. More... | |
Output Prefix | |
std::string | get_name (void) const |
Access to the output prefix of this loader. More... | |
std::string | get_output_prefix (void) const |
Access to the output prefix of this loader. More... | |
Data Management | |
const std::string & | get_sequence_type (void) |
unsigned | get_number_of_loaded_ensembles (void) |
Clonotype_ensemble & | get_clonotype_ensemble (unsigned i) |
const FT & | get_total_weight (unsigned i) |
const std::vector< FT > & | get_weights (unsigned i) |
boost::program_options::options_description | add_options (void) const |
Virtual method for adding options to the module. More... | |
bool | load (unsigned verbose, std::ostream &out, unsigned i) |
Once the command line options were parsed, build the containers of weights from the input files. More... | |
bool | load (unsigned verbose=false, std::ostream &out=std::cout) |
Once the command line options were parsed, build the containers of weights from the input files. More... | |
void | statistics (std::ostream &out) const |
Print high level statistics on the loaded weights. More... | |
Management | |
void | set_loader_instance_name (const std::string &loader_instance_name) |
const std::string & | get_loader_instance_name (void) const |
Loader for exactly two sequences.
FT | Representation of a weight. |
typedef SBL::IO::Loader_base Base |
typedef std::vector<std::string> Clonotype |
typedef std::vector<Clonotype> Clonotype_ensemble |
typedef T_Sequences_loader<FT> Self |
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inline |
Default constructor.
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inlinevirtual |
Virtual method for adding options to the module.
Reimplemented from T_Module_option_description< Dummy >.
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inlinevirtual |
Check that the parsed options are valid for this loader.
Reimplemented from T_Module_option_description< Dummy >.
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inlinestaticinherited |
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inline |
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inlineinherited |
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inlinevirtual |
Access to the output prefix of this loader.
Reimplemented from Loader_base.
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inline |
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inlinestaticinherited |
Access to the options' description of the module.
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inlinevirtual |
Access to the output prefix of this loader.
Reimplemented from T_Module_option_description< Dummy >.
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inline |
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inline |
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inline |
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inlinestaticinherited |
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inlinestaticinherited |
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inline |
Once the command line options were parsed, build the containers of weights from the input files.
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inlinevirtual |
Once the command line options were parsed, build the containers of weights from the input files.
Reimplemented from Loader_base.
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inlineinherited |
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inline |
Print high level statistics on the loaded weights.