| add_input_file_name(const std::string &file_name) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinestatic |
| add_options(void) const | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinevirtual |
| Base typedef | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | |
| check_options(std::string &message) const | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinevirtual |
| delete_options(void) | T_Module_option_description< Dummy > | inlinestatic |
| FT typedef | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | |
| get_covalent_structure(unsigned i) const | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inline |
| get_covalent_structure(unsigned i) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inline |
| get_input_file_name(void) const | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inline |
| get_input_file_name(unsigned i) const | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inline |
| get_loader_instance_name(void) const | Loader_base | inline |
| get_name(void) const | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinevirtual |
| get_number_of_loaded_covalent_structures(void) const | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inline |
| get_options(void) | T_Module_option_description< Dummy > | inlinestatic |
| get_output_prefix(void) const | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinevirtual |
| has_options(void) | T_Module_option_description< Dummy > | inlinestatic |
| initialize_options(const std::string &caption) | T_Module_option_description< Dummy > | inlinestatic |
| load(unsigned verbose=false, std::ostream &out=std::cout) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinevirtual |
| Loader_base(void) | Loader_base | inline |
| Self typedef | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | |
| set_allow_incomplete_chains(bool with_incomplete_chains) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinestatic |
| set_coarse_level(unsigned coarse_level) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinestatic |
| set_loaded_chains(const std::string &chains) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinestatic |
| set_loaded_chains(unsigned i, const std::string &chains) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinestatic |
| set_loaded_hetatoms(bool with_hetatoms) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinestatic |
| set_loaded_water(bool with_water) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinestatic |
| set_loader_instance_name(const std::string &loader_instance_name) | Loader_base | inline |
| set_max_bond_distance(double max_bond_distance) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinestatic |
| set_occupancy_factor(unsigned i) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinestatic |
| set_without_disulfide_bonds(bool without_ss) | T_Molecular_covalent_structure_loader_from_PDB< ParticleTraits, MolecularCovalentStructure, MolecularCovalentStructureBuilder, PDBLineFormat > | inlinestatic |
| ~Loader_base(void) | Loader_base | inlinevirtual |
1.9.1